View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_37 (Length: 383)

Name: NF5814_high_37
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_37
NF5814_high_37
[»] chr2 (32 HSPs)
chr2 (1-364)||(9065760-9066125)
chr2 (134-364)||(8573672-8573902)
chr2 (182-364)||(9291736-9291918)
chr2 (4-312)||(9315660-9315963)
chr2 (147-364)||(10347537-10347760)
chr2 (147-304)||(10335632-10335792)
chr2 (91-312)||(9284388-9284615)
chr2 (182-333)||(12012729-12012877)
chr2 (5-333)||(10371480-10371802)
chr2 (182-333)||(10352923-10353074)
chr2 (163-311)||(9061358-9061506)
chr2 (182-312)||(11987685-11987815)
chr2 (162-312)||(9328390-9328543)
chr2 (162-333)||(9320773-9320947)
chr2 (252-364)||(16268952-16269064)
chr2 (182-303)||(9274314-9274435)
chr2 (176-321)||(9364436-9364581)
chr2 (1-99)||(8573920-8574022)
chr2 (162-333)||(12006295-12006469)
chr2 (194-333)||(12019065-12019204)
chr2 (1-88)||(12012952-12013041)
chr2 (182-237)||(7115942-7115997)
chr2 (2-51)||(10352749-10352798)
chr2 (182-309)||(10341163-10341293)
chr2 (192-312)||(8579703-8579823)
chr2 (1-78)||(9291576-9291655)
chr2 (6-235)||(9294915-9295144)
chr2 (1-88)||(11987890-11987979)
chr2 (250-303)||(7115852-7115905)
chr2 (6-50)||(10335449-10335493)
chr2 (2-46)||(10341038-10341082)
chr2 (1-48)||(10347411-10347459)
[»] chr3 (2 HSPs)
chr3 (182-364)||(37462279-37462464)
chr3 (1-88)||(37462108-37462198)
[»] chr1 (7 HSPs)
chr1 (8-322)||(29467968-29468273)
chr1 (201-330)||(29453484-29453613)
chr1 (147-322)||(29423056-29423219)
chr1 (91-187)||(29443632-29443723)
chr1 (1-88)||(29422951-29423039)
chr1 (98-172)||(29453630-29453699)
chr1 (253-322)||(29443509-29443578)
[»] scaffold0667 (1 HSPs)
scaffold0667 (1-364)||(4083-4446)
[»] chr8 (1 HSPs)
chr8 (175-304)||(41966914-41967043)
[»] chr4 (1 HSPs)
chr4 (2-51)||(26574535-26574584)
[»] chr7 (2 HSPs)
chr7 (253-311)||(45230293-45230351)
chr7 (202-304)||(45237760-45237862)


Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 9066125 - 9065760
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagcagagtttagctacatatatcatatgatgggtcattgggtccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  9066125 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagcaaagtttagctacatatatcatatgatgggtcattgggtccatt 9066026  T
Q  101 gaactgatattaacttatacaaagcaagaactcaa--cttagaaaataaataagaagtaccttctcttggttgttcgattctccttcctacaattatcaa 198  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9066025 gaactgatattaacttgtacaaagcaagaactcaaaacttagaaaataaataagaagtaccttctcttggttgttcgattctccttcctacaattatcaa 9065926  T
Q  199 cagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatcata 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  9065925 cagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttcaaatcata 9065826  T
Q  299 ccaaaagagcttctgatgatctacctccaacaaaatctcaattccttccaacacaaccttacttcc 364  Q
    ||||||||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||    
T  9065825 ccaaaagagcttctgatgatctacctccaacaaaacctcaattgcttccaacagaaccttacttcc 9065760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 134 - 364
Target Start/End: Complemental strand, 8573902 - 8573672
Alignment:
Q  134 aacttagaaaataaataagaagtaccttctcttggttgttcgattctcct---tcctacaattatcaacagggaaggaagttggtacaagactttcaaca 230  Q
    |||| ||||||||||||||   |||||||||||| |||| | ||||||||   ||||||||||||||||||||||| ||| ||||||||||||| |||||    
T  8573902 aactaagaaaataaataag---taccttctcttgcttgtacaattctcctccttcctacaattatcaacagggaagaaaggtggtacaagacttccaaca 8573806  T
Q  231 caaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctacctccaaca 330  Q
    |||| || ||   ||||||||||||||| ||||||||||||| | |||||||||||||| |||||||||||||| ||||||  ||||  ||||||| |||    
T  8573805 caaaacatagctgcattccaattaggaattccttcaacataactgacttgttcactcttcaaatcataccaaaacagcttcctatgacatacctccgaca 8573706  T
Q  331 aaatctcaattccttccaacacaaccttacttcc 364  Q
    |||  |||||||||||||||| ||||||||||||    
T  8573705 aaacttcaattccttccaacagaaccttacttcc 8573672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 9291736 - 9291918
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 281  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||  |||| | ||||||||| ||||||||||||| ||| ||||    
T  9291736 cttcctacaattatcaacagggaaggaaggtggtagaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataactaatttgt 9291835  T
Q  282 tcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaatctcaattccttccaacacaaccttacttcc 364  Q
    |||||||| |||||||||||||| ||||||  ||||| |||||||||||||| || | |||| ||||||| ||||||||||||    
T  9291836 tcactcttcaaatcataccaaaacagcttcctatgatttacctccaacaaaacctgagttccgtccaacagaaccttacttcc 9291918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 4 - 312
Target Start/End: Original strand, 9315660 - 9315963
Alignment:
Q  4 aaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtcattgggtccattg 101  Q
    ||||||||||| ||||| || |||||| |||||| |||||||||||||| ||||  ||||||| |||| ||||||||||||||||||        |||||    
T  9315660 aaagtaattagggaatccttgtcctataataagaattcaatttgacctttagcatagagtttaactacttatatcatatgatgggtc--------cattg 9315751  T
Q  102 aactgatattaacttatacaaagcaagaactcaacttagaaaataaataagaagtaccttctcttggt------tgttcgattctccttc---ctacaat 192  Q
    |||||| ||||||||||||| ||||| ||||||| |     |||| |||||   |||||||||||| |      |||  |||||||||||   |||||||    
T  9315752 aactgacattaacttatacatagcaaaaactcaaat-----aatatataag---taccttctcttgttcttgcttgtatgattctccttcttcctacaat 9315843  T
Q  193 tatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaa 292  Q
     ||||||||||||||||| |||||||||||||||||||||||||| ||  |||| | |||||| || |||||||||||||||||||||||||||| | ||    
T  9315844 aatcaacagggaaggaaggtggtacaagactttcaacacaaatcatagcttcatccaaattagaaattccttcaacataaataacttgttcactcatcaa 9315943  T
Q  293 atcataccaaaagagcttct 312  Q
     ||| ||||||| |||||||    
T  9315944 gtcacaccaaaacagcttct 9315963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 147 - 364
Target Start/End: Original strand, 10347537 - 10347760
Alignment:
Q  147 aataagaagtaccttctcttggttgttcgattctccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgt 243  Q
    ||||||||||||||||||||| |||   |||||||||||   |||| |||||||||||||||||||| ||| ||||||||| ||||||||| || ||| |    
T  10347537 aataagaagtaccttctcttgcttggatgattctccttcttcctacgattatcaacagggaaggaaggtgggacaagacttccaacacaaaacatagttt 10347636  T
Q  244 cattccaattagga---actccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaatctcaat 340  Q
    |||||  |||||||   | ||||||||||||| ||| |||||||||||| |||||||||||||| ||||||  ||| | ||||||||||||||  | |      
T  10347637 cattcatattaggaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaacagcttcctatgttgtacctccaacaaaacatgagc 10347736  T
Q  341 tccttccaacacaaccttacttcc 364  Q
    || |||||||| ||||||||||||    
T  10347737 tctttccaacagaaccttacttcc 10347760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 147 - 304
Target Start/End: Original strand, 10335632 - 10335792
Alignment:
Q  147 aataagaagtaccttctcttggttgttcgattctccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgt 243  Q
    |||||||||||||||| |||| |||| ||||||| ||||   |||| |||||||||||| ||||||| ||  ||||||||| |||||||||||| |||||    
T  10335632 aataagaagtaccttcccttgcttgtacgattctgcttcttcctacgattatcaacaggtaaggaaggtgaaacaagacttccaacacaaatcatagtgt 10335731  T
Q  244 cattccaattaggaactccttcaacataaataacttgttcactcttaaaatcataccaaaa 304  Q
    ||| | ||||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||    
T  10335732 catccaaattaggaattccttcaacataactaatttgttcactcttcaaatcataccaaaa 10335792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 91 - 312
Target Start/End: Complemental strand, 9284615 - 9284388
Alignment:
Q  91 tgggtccattgaactgatattaacttatacaaagcaagaactcaacttagaaaataaataa-gaagtaccttctcttggt--tgtt----cgattctcct 183  Q
    |||||||||| |||| | ||||||||||||||||||| ||    ||| ||| ||| ||||| |||||||||||||||| |  || |    ||||||||||    
T  9284615 tgggtccattaaactaaaattaacttatacaaagcaaaaa----actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctcct 9284520  T
Q  184 tcctac---aattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttg 280  Q
    || |||   ||||||||||||||||||||| ||| |||||||||||||||||||||| ||  |||| | ||||||||| |||||||||||||||||||||    
T  9284519 tcttactagaattatcaacagggaaggaaggtggcacaagactttcaacacaaatcatagcttcatccaaattaggaattccttcaacataaataacttg 9284420  T
Q  281 ttcactcttaaaatcataccaaaagagcttct 312  Q
     |||||||| |||||||||||||  |||||||    
T  9284419 ctcactcttcaaatcataccaaaccagcttct 9284388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 182 - 333
Target Start/End: Complemental strand, 12012877 - 12012729
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 281  Q
    ||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| ||  ||||   ||||||||| ||||||||||||| |||||||     
T  12012877 cttcctagaattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaaattaggaattccttcaacataactaacttg- 12012779  T
Q  282 tcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
      |||||| |||||||||||||  ||||||| ||||| ||||||||||||||    
T  12012778 --actcttcaaatcataccaaaccagcttcttatgatttacctccaacaaaa 12012729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 5 - 333
Target Start/End: Original strand, 10371480 - 10371802
Alignment:
Q  5 aagtaattagagaatc-tttatcctatgataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtcattgggtccattg 101  Q
    ||||||||||| |||| |||| |||||||||||| |||||||||||||| | ||  ||||||| || ||||||| ||||||||| ||        |||||    
T  10371480 aagtaattagaaaatcctttaccctatgataagaattcaatttgacctttaacacagagtttaactgcatatataatatgatggatc--------cattg 10371571  T
Q  102 aactgatattaacttatacaaagcaagaactcaacttagaaaataaataagaagtaccttctcttggttgttcgattctccttc---ctacaattatcaa 198  Q
    |||||||||||||||||||| | ||| ||||||  |||      ||| || ||||||||||||||| ||||  |||||||||||   |||| ||||||||    
T  10371572 aactgatattaacttatacacaacaaaaactcag-tta------aaacaataagtaccttctcttgcttgtatgattctccttcttcctaccattatcaa 10371664  T
Q  199 caggg-aaggaagt--tggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatc 295  Q
    || || ||||  ||  ||||||||||||  ||||||||| || ||  |||| | |||||| |  ||||||||||||| |||||||||||||||| |||||    
T  10371665 caaggtaagggggtggtggtacaagactaccaacacaaaccatagcatcatccaaattagaatttccttcaacataactaacttgttcactcttcaaatc 10371764  T
Q  296 ataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
    ||||||||| ||||||  ||| | ||||||||||||||    
T  10371765 ataccaaaacagcttccaatgttgtacctccaacaaaa 10371802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 182 - 333
Target Start/End: Original strand, 10352923 - 10353074
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 281  Q
    |||||||| |||||||||||||||| ||| ||||||||||||| |||||||||||| |||||||| | ||||| ||| | ||| ||||||| ||||||||    
T  10352923 cttcctacgattatcaacagggaagtaaggtggtacaagacttccaacacaaatcatagtgtcatccaaattaagaatttcttgaacataactaacttgt 10353022  T
Q  282 tcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
    | |||||  |||||||||||||| || |||| |  |||||||  ||||||||    
T  10353023 ttactctccaaatcataccaaaatagattctcaacatctaccctcaacaaaa 10353074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 163 - 311
Target Start/End: Complemental strand, 9061506 - 9061358
Alignment:
Q  163 tcttggttgttcgattctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactcc 262  Q
    ||||| |||| |||||||||||| ||||| |||||||||||||| ||| || ||| |||||| ||||| ||| || ||  ||||   ||||||||| |||    
T  9061506 tcttgcttgtacgattctccttcttacaagtatcaacagggaagaaaggtgatacgagacttccaacataaaacatagcttcatcaaaattaggaattcc 9061407  T
Q  263 ttcaacataaataacttgttcactcttaaaatcataccaaaagagcttc 311  Q
    |||||||||| |||||||||||||||| | |||||||||||| ||||||    
T  9061406 ttcaacataactaacttgttcactcttgagatcataccaaaacagcttc 9061358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 11987815 - 11987685
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 281  Q
    ||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||| ||  ||||   | ||||||| ||| ||||||||| ||| ||||    
T  11987815 cttcctagaattatcaacagggaaggagggtggtacaagacttccaacacaaatcatagcttcatcgaatttaggaattccgtcaacataactaaattgt 11987716  T
Q  282 tcactcttaaaatcataccaaaagagcttct 312  Q
    |||||||| |||||||||||||  |||||||    
T  11987715 tcactcttcaaatcataccaaaccagcttct 11987685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 162 - 312
Target Start/End: Original strand, 9328390 - 9328543
Alignment:
Q  162 ctcttggttgttcgattctccttc---ctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaa 258  Q
    |||||| |||| ||||||||||||   ||| ||||||||||||||||||||| ||||||||||||| ||||| ||| || |   ||||   ||| |||||    
T  9328390 ctcttgcttgtacgattctccttcttcctagaattatcaacagggaaggaaggtggtacaagacttccaacagaaaacataacatcatggaaatcaggaa 9328489  T
Q  259 ctccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttct 312  Q
     ||||||||||||| |||||||| ||||| ||||||||||| |||| |||||||    
T  9328490 ttccttcaacataactaacttgtgcactcctaaaatcatacaaaaacagcttct 9328543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 162 - 333
Target Start/End: Original strand, 9320773 - 9320947
Alignment:
Q  162 ctcttggttgttcgattctccttcct---acaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaa 258  Q
    |||||| |||| |||||||||||| |   | ||||||||||||||||||||| ||| ||||||||| ||||||||| || |    |||   ||| |||||    
T  9320773 ctcttgcttgtacgattctccttcttcttagaattatcaacagggaaggaaggtgggacaagacttccaacacaaaacataactccatggaaatcaggaa 9320872  T
Q  259 ctccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
     ||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| |  |||||||  ||||||||    
T  9320873 ttccttcaacataactaacttgtgcactcttcaaatcataccaaaacagcttctcagcatctaccctcaacaaaa 9320947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 252 - 364
Target Start/End: Original strand, 16268952 - 16269064
Alignment:
Q  252 ttaggaactccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaatctcaattccttccaaca 351  Q
    ||||||| ||||||||||||| ||||| |||||||||| |||||||||||||| | ||||| || ||  || |||||||||| |||||||||||| || |    
T  16268952 ttaggaattccttcaacataactaactcgttcactcttcaaatcataccaaaacaacttcttataatgcacgtccaacaaaacctcaattccttcaaaga 16269051  T
Q  352 caaccttacttcc 364  Q
     ||||||||||||    
T  16269052 gaaccttacttcc 16269064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 303
Target Start/End: Original strand, 9274314 - 9274435
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgt 281  Q
    ||||||| ||||||||||||||||||| | |||||||| |||| |||| ||||| | |||  ||||  | ||||||| ||||| |||| || ||||||||    
T  9274314 cttcctagaattatcaacagggaaggagggtggtacaaaacttccaacccaaataatagttccattgaagttaggaattcctttaacaaaactaacttgt 9274413  T
Q  282 tcactcttaaaatcataccaaa 303  Q
    |||||||| |||||||||||||    
T  9274414 tcactcttcaaatcataccaaa 9274435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 176 - 321
Target Start/End: Original strand, 9364436 - 9364581
Alignment:
Q  176 attctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaata 275  Q
    ||||||||||||||||||||||||||| || |||| ||||||||||||  |||||||||||| ||  ||||||  |||||||| ||||  ||||  | ||    
T  9364436 attctccttcctacaattatcaacaggtaaagaaggtggtacaagactaccaacacaaatcatagcttcattcatattaggaattcctggaacactagta 9364535  T
Q  276 acttgttcactcttaaaatcataccaaaagagcttctgatgatcta 321  Q
    || | ||||||||| | ||| |||||||| ||||||| | ||||||    
T  9364536 acgttttcactcttgagatcgtaccaaaacagcttcttacgatcta 9364581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 8574022 - 8573920
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatg--ataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtcattgggtc 96  Q
    |||||||||||||||||||| || |||||||  |||||| || ||||||||||| ||||  ||||||| | ||||||||||||||||||||||||||||     
T  8574022 ttcaaagtaattagagaatccttgtcctatgtgataagaatttaatttgacctttagcatagagtttaaccacatatatcatatgatgggtcattgggta 8573923  T
Q  97 cat 99  Q
    |||    
T  8573922 cat 8573920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 162 - 333
Target Start/End: Complemental strand, 12006469 - 12006295
Alignment:
Q  162 ctcttggttgttcgattctccttcct---acaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaa 258  Q
    |||||| |||| |||||||||||| |   |||||| ||||||||||||||||   ||||||||||| ||||||||||||  |  ||||   |||| ||||    
T  12006469 ctcttgcttgtacgattctccttcttcgtacaattctcaacagggaaggaaggcagtacaagacttccaacacaaatcatcgcttcatcgaaatttggaa 12006370  T
Q  259 ctccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
     ||| ||||  ||| |||||| ||||||||| |||||||||||||  ||||||| ||||| |||||| |||||||    
T  12006369 ttccctcaatgtaattaacttcttcactcttcaaatcataccaaaccagcttcttatgatttacctcaaacaaaa 12006295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 194 - 333
Target Start/End: Complemental strand, 12019204 - 12019065
Alignment:
Q  194 atcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaa 293  Q
    |||| |||| ||||||| ||||||||||||| ||||||||||||  |  ||||   ||||||||| ||||||||||||| ||||||| | |||||| |||    
T  12019204 atcagcaggtaaggaaggtggtacaagacttccaacacaaatcatggcttcatcgaaattaggaattccttcaacataactaacttgctgactcttcaaa 12019105  T
Q  294 tcataccaaaagagcttctgatgatctacctccaacaaaa 333  Q
    ||||||||||  ||| | | ||||| ||| ||||||||||    
T  12019104 tcataccaaaccagcatattatgatttacatccaacaaaa 12019065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 12013041 - 12012952
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtc 88  Q
    |||||||||||||||||||| || |||||| |||||| |||||||||||||| | ||  |||| || |||||||||||||||||||||||    
T  12013041 ttcaaagtaattagagaatccttgtcctataataagaattcaatttgacctttaacatggagtctaactacatatatcatatgatgggtc 12012952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 182 - 237
Target Start/End: Complemental strand, 7115997 - 7115942
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatca 237  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||    
T  7115997 cttcctacaattatcaacagggaaggaaggtggtacaaggctttcaaaacaaatca 7115942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 10352749 - 10352798
Alignment:
Q  2 tcaaagtaattagagaatctttatcctatgataagacttcaatttgacct 51  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  10352749 tcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 10352798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 182 - 309
Target Start/End: Original strand, 10341163 - 10341293
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaac---ataaataact 278  Q
    |||||||| ||| |||||||||||| ||| |||||| | |||| ||||||| |||| ||  |||| | ||| ||||| |||||||||   |||| |||||    
T  10341163 cttcctacgattgtcaacagggaagaaaggtggtactatacttccaacacacatcatagcatcatccaaatcaggaattccttcaacataataactaact 10341262  T
Q  279 tgttcactcttaaaatcataccaaaagagct 309  Q
    ||||||||||  |||||||||||||| ||||    
T  10341263 tgttcactctccaaatcataccaaaacagct 10341293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 8579823 - 8579703
Alignment:
Q  192 ttatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaa 291  Q
    ||||||| ||| ||||||| ||||| |||  || ||||| |||||| ||| |||||  ||||||||| ||||| |||| || |||||| |||||| || |    
T  8579823 ttatcaataggcaaggaaggtggtagaagggttccaacataaatcatagtttcattgaaattaggaattccttgaacacaagtaacttcttcacttttga 8579724  T
Q  292 aatcataccaaaagagcttct 312  Q
     |||||||||||| |||||||    
T  8579723 gatcataccaaaacagcttct 8579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 9291576 - 9291655
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagc--agagtttagctacatatatcat 78  Q
    |||||||||||||||||||| || |||||| |||||| |||||||| ||||| |||  |||||||| |||||| ||||||    
T  9291576 ttcaaagtaattagagaatccttgtcctataataagaattcaatttaacctttagcatagagtttaactacatgtatcat 9291655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 235
Target Start/End: Complemental strand, 9295144 - 9294915
Alignment:
Q  6 agtaattagagaatctttatcctatgataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtcattgggtccattgaa 103  Q
    ||||||||||||| |  | |||||| |||||| |||||||||||||| ||||  ||||||| | ||||| || ||||||||||||        |||| ||    
T  9295144 agtaattagagaacccctgtcctataataagaattcaatttgacctttagcatagagtttaaccacataaattatatgatgggtc--------cattaaa 9295053  T
Q  104 ctgatattaacttatacaaagcaagaactcaacttagaaaataaataa-gaagtaccttctcttggt--tgtt----cgattctccttcctac---aatt 193  Q
    || | ||||||||||||||||||| ||    ||| ||| ||| ||||| |||||||||||||||| |  || |    |||||||||||| |||   ||||    
T  9295052 ctaaaattaacttatacaaagcaaaaa----actcagataatcaataaagaagtaccttctcttgctcttgcttaaacgattctccttcttactagaatt 9294957  T
Q  194 atcaacagggaaggaagttggtacaagactttcaacacaaat 235  Q
    ||||||||||||||||| || ||| |||||||||||| ||||    
T  9294956 atcaacagggaaggaaggtgctacgagactttcaacataaat 9294915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 11987979 - 11987890
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagc--agagtttagctacatatatcatatgatgggtc 88  Q
    ||||||||||||||| |||| || |||||| ||| || |||||||||||||| | |  | |||||| |||||||||||| ||||||||||    
T  11987979 ttcaaagtaattagaaaatccttgtcctataataggaattcaatttgacctttaacataaagtttaactacatatatcacatgatgggtc 11987890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 250 - 303
Target Start/End: Complemental strand, 7115905 - 7115852
Alignment:
Q  250 aattaggaactccttcaacataaataacttgttcactcttaaaatcataccaaa 303  Q
    ||||||||| |||||||||| || |||||||||| ||||| |||||||||||||    
T  7115905 aattaggaattccttcaacacaactaacttgttcgctcttcaaatcataccaaa 7115852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 50
Target Start/End: Original strand, 10335449 - 10335493
Alignment:
Q  6 agtaattagagaatctttatcctatgataagacttcaatttgacc 50  Q
    ||||||||||||||| | |||||||||||||| ||||||||||||    
T  10335449 agtaattagagaatcctcatcctatgataagaattcaatttgacc 10335493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 46
Target Start/End: Original strand, 10341038 - 10341082
Alignment:
Q  2 tcaaagtaattagagaatctttatcctatgataagacttcaattt 46  Q
    |||| |||||||||||||| |||||||||||||||| ||||||||    
T  10341038 tcaaggtaattagagaatccttatcctatgataagaattcaattt 10341082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 10347411 - 10347459
Alignment:
Q  1 ttcaaagtaattagagaat-ctttatcctatgataagacttcaatttga 48  Q
    ||||||||||||||| ||| || ||||||||||||||| ||||||||||    
T  10347411 ttcaaagtaattagaaaatactctatcctatgataagaattcaatttga 10347459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 37462279 - 37462464
Alignment:
Q  182 cttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatca---cagtgtcattccaattaggaactccttcaacataaataact 278  Q
    |||||||||||||||||||||||| | || || |||||||||||||||||||||||   |||   ||||| |||||||||||||||||| |||| |||||    
T  37462279 cttcctacaattatcaacagggaaaggaggtgatacaagactttcaacacaaatcatagcagctccattcaaattaggaactccttcaatataactaact 37462378  T
Q  279 tgttcactcttaaaatcataccaaaagagc-ttctgatgatctacctccaacaaaatctcaattccttccaacacaaccttacttcc 364  Q
    |||||||||||  ||||||||||||| ||| ||||| |||||||||| |||||||| || ||| |||||||||| ||||||||||||    
T  37462379 tgttcactcttccaatcataccaaaacagctttctg-tgatctaccttcaacaaaacctgaatgccttccaacaaaaccttacttcc 37462464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 37462108 - 37462198
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgacc-ttgagc--agagtttagctacatatatcatatgatgggtc 88  Q
    |||||||||||||||||||| || |||||| | |||| |||||||||||| || |||  |||  ||| |||||||||||||||||||||||    
T  37462108 ttcaaagtaattagagaatccttgtcctataacaagaattcaatttgaccttttagcatagaacttaactacatatatcatatgatgggtc 37462198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 8 - 322
Target Start/End: Complemental strand, 29468273 - 29467968
Alignment:
Q  8 taattagagaatctttatcctatgataagacttcaatttgaccttg-agcagagtttagctacatatatcatatgatgggtcattgggtccattgaactg 106  Q
    ||||||||||||| || |||||| |||||| ||||||||||||||  | ||||||||| || |||||||||||| ||  |  |   |||||||| |||||    
T  29468273 taattagagaatcattgtcctataataagaattcaatttgaccttttaacagagtttaactgcatatatcatatcatatgata---ggtccatt-aactg 29468178  T
Q  107 --atattaacttatacaaagcaagaactcaa----cttagaaaataaataagaagtaccttctcttggttgttcgattctccttcctacaattatcaaca 200  Q
      ||||||||||||||| | ||| |||||||    || ||| ||| ||||||||||||||||||||| |||| |||||||| ||||||                
T  29468177 tgatattaacttatacataacaaaaactcaaaaaactcagacaatcaataagaagtaccttctcttgcttgtgcgattctcgttccta------------ 29468090  T
Q  201 gggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatcatacc 300  Q
    |||||||||| ||||||||||||| |||||||||||| ||  |||||| ||||||||| ||||||||||||| |||| ||||||||||| | ||||||||    
T  29468089 gggaaggaaggtggtacaagacttccaacacaaatcatagcttcattcaaattaggaattccttcaacataattaacatgttcactcttgagatcatacc 29467990  T
Q  301 aaaagagcttctgatgatctac 322  Q
    |||| | ||||| ||| |||||    
T  29467989 aaaacaacttctcatggtctac 29467968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 330
Target Start/End: Complemental strand, 29453613 - 29453484
Alignment:
Q  201 gggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatcatacc 300  Q
    |||||||||| ||| ||||||||| |||||||||||| ||  | ||   ||||||||| |||||||||| || |||||||||||||||| | ||||||||    
T  29453613 gggaaggaaggtggcacaagacttccaacacaaatcatagcttgatcgaaattaggaattccttcaacacaactaacttgttcactcttgagatcatacc 29453514  T
Q  301 aaaagagcttctgatgatctacctccaaca 330  Q
    |||| ||||||| |  |||||| |||||||    
T  29453513 aaaacagcttctcacaatctacttccaaca 29453484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 147 - 322
Target Start/End: Original strand, 29423056 - 29423219
Alignment:
Q  147 aataagaagtaccttctcttggttgttcgattctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcat 246  Q
    ||||||||||||||||||||| |||| |||||||||||||||            |||||||||| || |||||||||| ||||||||||||  |  | ||    
T  29423056 aataagaagtaccttctcttgcttgtgcgattctccttccta------------gggaaggaaggtgatacaagacttccaacacaaatcatggcttgat 29423143  T
Q  247 tccaattaggaactccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctac 322  Q
       ||||||||| ||||| |||| || |||||||||||||||| | |||||||||||| ||||||| | |||||||    
T  29423144 cgaaattaggaattccttgaacacaactaacttgttcactcttgagatcataccaaaacagcttctcaggatctac 29423219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 187
Target Start/End: Complemental strand, 29443723 - 29443632
Alignment:
Q  91 tgggtccattgaactgatattaacttatacaaagcaagaactcaacttagaaaataaataagaagtaccttctcttggttgttcgattctccttcct 187  Q
    ||||||||||||| |||||||||||||||||||| || ||||||  |     ||| ||||||||||||||||||||| ||||| |||||||||||||    
T  29443723 tgggtccattgaattgatattaacttatacaaagaaaaaactcaggt-----aatcaataagaagtaccttctcttgcttgtttgattctccttcct 29443632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Original strand, 29422951 - 29423039
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgacc-ttgagcagagtttagctacatatatcatatgatgggtc 88  Q
    |||||| ||||||||||||| || || ||| |||||| |||||||||||| || | ||||||||| ||| |||||||||||||| ||||    
T  29422951 ttcaaaataattagagaatcattgtcatataataagaattcaatttgaccttttaacagagtttaactagatatatcatatgatcggtc 29423039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 29453699 - 29453630
Alignment:
Q  98 attgaactgatattaacttatacaaagcaagaactcaacttagaaaataaataagaagtaccttctcttggttgt 172  Q
    |||||||||| ||||||||||||| ||||| ||||||     || |||||||||| |||||||||||||| ||||    
T  29453699 attgaactgaaattaacttatacagagcaaaaactca-----gataataaataaggagtaccttctcttgcttgt 29453630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 29443578 - 29443509
Alignment:
Q  253 taggaactccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttctgatgatctac 322  Q
    |||||| ||||||||||||| ||||   ||||||||| | |||||||||||| ||||||| | |||||||    
T  29443578 taggaattccttcaacataactaacacattcactcttgagatcataccaaaacagcttctcacgatctac 29443509  T

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Target: scaffold0667 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 4083 - 4446
Alignment:
Q  1 ttcaaagtaattagagaatctttatcctatgataagacttcaatttgaccttgagca--gagtttagctacatatatcatatgatgggtcattgggtcca 98  Q
    ||||||||||||| |||||| || |||||| |||||| ||||||||||  || ||||  ||||||| ||| ||| |||||||||||||||        ||    
T  4083 ttcaaagtaattatagaatccttttcctataataagaattcaatttgagttttagcacagagtttaactaaataaatcatatgatgggtc--------ca 4174  T
Q  99 ttgaactgatattaacttatacaaagcaagaactcaacttagaaaataaataagaagtaccttctcttggt------tgttcgattctccttcctac--- 189  Q
    |||||| |||||||||||||||| ||||| |||| ||   |    ||||  || ||||||||| ||||| |      |||  ||||||||||| |||       
T  4175 ttgaacagatattaacttatacacagcaaaaactgaaaaaactcgataatcaataagtaccttttcttgctcttgcatgtatgattctccttcttactag 4274  T
Q  190 aattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactctt 289  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||||  ||   ||||  ||| ||||| | |||||   ||| ||||||||||| ||||    
T  4275 aattatcaacaggaaaggaaggtggtacaagacttccaacacaaatcttagctccattgaaatcaggaatttcttca---taactaacttgttcagtctt 4371  T
Q  290 aaaatcataccaaaagagcttctgatgatctacctccaacaaaatctcaattccttccaacacaaccttacttcc 364  Q
     |||||||||||||| ||||||| |||||  ||||||||||||| |||||||||||| | || ||||||||||||    
T  4372 caaatcataccaaaacagcttcttatgatgcacctccaacaaaacctcaattccttcaatcagaaccttacttcc 4446  T

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Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 175 - 304
Target Start/End: Complemental strand, 41967043 - 41966914
Alignment:
Q  175 gattctccttcctacaattatcaacagggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaat 274  Q
    ||||||||||| |||||||| ||||||||||||||| ||||||||||||| ||||||||| ||  |  ||||   ||||||||| ||||||||||||| |    
T  41967043 gattctccttcttacaattaacaacagggaaggaaggtggtacaagacttccaacacaaaacatggcttcatcaaaattaggaattccttcaacataagt 41966944  T
Q  275 aacttgttcactcttaaaatcataccaaaa 304  Q
    || |||||||||||| ||||||||||||||    
T  41966943 aatttgttcactcttcaaatcataccaaaa 41966914  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 2 - 51
Target Start/End: Original strand, 26574535 - 26574584
Alignment:
Q  2 tcaaagtaattagagaatctttatcctatgataagacttcaatttgacct 51  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||    
T  26574535 tcaaagtaattagagaatccttatcctatgataagaattcaatttgacct 26574584  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 45230293 - 45230351
Alignment:
Q  253 taggaactccttcaacataaataacttgttcactcttaaaatcataccaaaagagcttc 311  Q
    |||||| ||||| ||||| | |||||||||||||||| |||||||||||||| ||||||    
T  45230293 taggaattccttgaacatgagtaacttgttcactcttgaaatcataccaaaacagcttc 45230351  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 202 - 304
Target Start/End: Original strand, 45237760 - 45237862
Alignment:
Q  202 ggaaggaagttggtacaagactttcaacacaaatcacagtgtcattccaattaggaactccttcaacataaataacttgttcactcttaaaatcatacca 301  Q
    ||||||||| ||||||||| |||||| |||||||||     |||||| || |||||| ||||  ||||||||||||||||||| |||| |  ||||||||    
T  45237760 ggaaggaaggtggtacaaggctttcagcacaaatcattacttcattcaaagtaggaattcctcgaacataaataacttgttcattcttgaggtcatacca 45237859  T
Q  302 aaa 304  Q
    |||    
T  45237860 aaa 45237862  T

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