View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_39 (Length: 381)
Name: NF5814_high_39
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_39 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 16 - 381
Target Start/End: Original strand, 265049 - 265414
Alignment:
| Q |
16 |
caccaaaaacaccaactttcttgctcttaaccctagcattcgcattttcattcgagtttgaacctgcatttctccgatcatcatctttcccattctcatc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
|
|
| T |
265049 |
caccaaaaacaccaactttcttgctcttaaccctagcattcgcattttcattcgagtttgaacctgcatttctccgatcatcgtctttcccattctcgtc |
265148 |
T |
|
| Q |
116 |
aaaaaacaccaacttattatcatcaacaatatcaccaacctctttattcttcccaaaaacaccaactttcatgttcctaaccctagtattcgcattcgaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
265149 |
aaaaaacaccaacttattatcatcaacaatatcaccaacctctttattcttcccaaaaacaccaactttcatgttcctaaccctagtattcgcattcgaa |
265248 |
T |
|
| Q |
216 |
ttagcatttgaacttgtataacttgcatatgaacaattagattgaccaggtttcaaaaaagcctgatccaaacactgattaggaaaatactttttctcta |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
265249 |
ttagcatttgaacttgtataacttgcatatgaacaattagattgaccaggtttcaaaaaagcctgatccaaacactgattaggaaaatactttttctcca |
265348 |
T |
|
| Q |
316 |
actgatacaccattttataatgcttatctttctcccaaggataacaaaaagcatcatacatataca |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
265349 |
actgatacaccattttataatgcttatctttctcccaaggataacaaaaagcatcatacatataca |
265414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University