View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_47 (Length: 350)
Name: NF5814_high_47
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_47 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 80 - 339
Target Start/End: Original strand, 41459978 - 41460245
Alignment:
| Q |
80 |
tggccggactataaaaagtacaatgcatgatttgcccgtgatcttgtccatgaatacaggcacctctgtagctaatattatttagaaccaagcttctctt |
179 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41459978 |
tggccggactataaaaagtacaatgcatgatttgcccgtgatcttgtccatgaatacaggcacctctgtagctaatattatttagaaccaagcttctctt |
41460077 |
T |
|
| Q |
180 |
aacatttctacctgagattgccgatgtccagcgacaaataataacgaatgtaatacgagttctatcaagtggttgtaactagtaaaagtaactgggaagg |
279 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41460078 |
aacatttctacctgagattgccgatgtccagcgacaaataatatcgagtgtaatacgagttctgtcaagtggttgtaactagtaaaagtaactgggaagg |
41460177 |
T |
|
| Q |
280 |
gaaggtagcgaggcg--------tgtataactgctatgaatgattggctcatttttgtcatagtctgt |
339 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41460178 |
gaaggtagcgaggcgtgtacttttgtataactgctatgaatgattggctcatttttgtcatagtctgt |
41460245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 41459684 - 41459765
Alignment:
| Q |
1 |
agttgtcctgcttgaaatggtatgtggtaggagggtaattgacaataataaaccatatggagaacacaacttggtccaatgg |
82 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41459684 |
agttgtcctgcttgaaatggtatgtggtaggagggtaattgacaataataaaccatatggagaacacaacttggtccaatgg |
41459765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41449242 - 41449286
Alignment:
| Q |
1 |
agttgtcctgcttgaaatggtatgtggtaggagggtaattgacaa |
45 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41449242 |
agttgtcctgcttgaaatggtatgtggtaggagggtaattgacaa |
41449286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 41442795 - 41442869
Alignment:
| Q |
1 |
agttgtcctgcttgaaatggtatgtggtaggagggtaattgacaataataaaccatatggagaacacaacttggt |
75 |
Q |
| |
|
||||||||||||||||||| ||| |||| ||||| | ||||||| |||| ||||| |||| |||||| |||||| |
|
|
| T |
41442795 |
agttgtcctgcttgaaatgttatccggtaagagggcagttgacaagaatagaccatctggacaacacagcttggt |
41442869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University