View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_52 (Length: 327)
Name: NF5814_high_52
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_52 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 46642571 - 46642890
Alignment:
| Q |
1 |
tattttggttgtttcattttcttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagaca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
46642571 |
tattttggttgtttcattttcttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaactttgtcgaattccgcttaatgcttttagaca |
46642670 |
T |
|
| Q |
101 |
tatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcatctggctcaactttacgaactgaattaacaggcacaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46642671 |
tatccttgctatgttttacattccttgtataactttgcccttcatcgtttataccagcagcatctggctcaactttacgaactgaattaacaggcacaaa |
46642770 |
T |
|
| Q |
201 |
tttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaagatcggggc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46642771 |
tttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaagatcggggc |
46642870 |
T |
|
| Q |
301 |
ttgaggtaacattgatgatg |
320 |
Q |
| |
|
||||||||||||||| |||| |
|
|
| T |
46642871 |
ttgaggtaacattgacgatg |
46642890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 64 - 314
Target Start/End: Complemental strand, 46630353 - 46630103
Alignment:
| Q |
64 |
gtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcat |
163 |
Q |
| |
|
|||||||||||||||||| | | ||| ||||||||| |||||||||||| ||||| ||||| |||| | |||||||||| ||| ||||||||||| |
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|
| T |
46630353 |
gtcaactttgtcgaattctgttttatgtttttagacaaatccttgctatggtttactttcctcatatatttgtgccctttatattttttaccagcagcat |
46630254 |
T |
|
| Q |
164 |
ctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaa |
263 |
Q |
| |
|
|| |||||||||| | |||||||| ||||||| ||||||| ||||| | ||||||||||||||| | |||||||||||| | |||| || |||| || |
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|
| T |
46630253 |
ctacatcaactttactcaatgaattaataggcacatatttcaattcccttagatcagatggctttccgtcatgcaccaaactagcatcagtaaccatgaa |
46630154 |
T |
|
| Q |
264 |
ttttatatgatctttattgtaggtaaaagatcggggcttgaggtaacattg |
314 |
Q |
| |
|
||| || ||||||||| |||| | | ||||||| ||||||||||||||||| |
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|
| T |
46630153 |
tttgatgtgatctttactgtaagaagaagatcgaggcttgaggtaacattg |
46630103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 21 - 320
Target Start/End: Original strand, 46175984 - 46176269
Alignment:
| Q |
21 |
cttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttaca |
120 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||| || | ||||||||| | |||||| |||||||||||||||||||||||| ||| ||||| |
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|
| T |
46175984 |
cttcaatagttttatgtcagaaagtctattggtatcaataactgccaactttgttgcattccgtttaatgcttttagacatatccttgccatggtttact |
46176083 |
T |
|
| Q |
121 |
ttccttgtataactttgccctttatcgtttacaccagcagcatctggctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcag |
220 |
Q |
| |
|
||||| |||| ||| ||||| ||||||||||| ||||||| || |||||||| ||| ||||| ||||||| |||| | ||||| |
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|
| T |
46176084 |
ttcctcgtatg---------ttt----tttac--cagcagcatctacatcaacttcacacactgaatttacaagcacatatttcaatacccttagatcag |
46176168 |
T |
|
| Q |
221 |
atggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtagg-taaaagatcggggcttgaggtaacattgatgat |
319 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| || |||| ||||||||||||||||||| ||| |
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|
| T |
46176169 |
atggctttccgccatgcaccaaactggtatcaataaccatgaattttatatgatctttattgtaggttagcagatttgggcttgaggtaacattgacgat |
46176268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 168 - 311
Target Start/End: Complemental strand, 46619365 - 46619222
Alignment:
| Q |
168 |
ctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaatttt |
267 |
Q |
| |
|
|||||||||| | || ||||||||||||||| ||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||| |||| ||||| |
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|
| T |
46619365 |
ctcaactttaggcaccgaattaacaggcacagatttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccatgaatttg |
46619266 |
T |
|
| Q |
268 |
atatgatctttattgtaggtaaaagatcggggcttgaggtaaca |
311 |
Q |
| |
|
|||||||||||| |||| ||| |||||||||||||||||||||| |
|
|
| T |
46619265 |
atatgatctttactgtaagtagaagatcggggcttgaggtaaca |
46619222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 320
Target Start/End: Complemental strand, 46638044 - 46637919
Alignment:
| Q |
195 |
cacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaagat |
294 |
Q |
| |
|
|||| ||||||| ||||| ||| |||||| |||||| |||||||||||||||||||||| ||| ||||| |||||||||||| |||| ||| |||| |
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|
| T |
46638044 |
cacagatttcaattcccttaaagcagatgactttccaccatgcaccaaactggtatcaataaccaagaatttgatatgatctttactgtaagtagaagac |
46637945 |
T |
|
| Q |
295 |
cggggcttgaggtaacattgatgatg |
320 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
46637944 |
cggggcttgaggtaacattgacgatg |
46637919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 46638203 - 46638093
Alignment:
| Q |
21 |
cttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttaca |
120 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| || || ||||||||||| ||| | |||||||||||| | |||||||||||| ||||| |
|
|
| T |
46638203 |
cttcaatagttttccttcagaatatctattggtatcaattactgttaactttgtcgacttctgtttaatgcttttaggcgcatccttgctatggtttacc |
46638104 |
T |
|
| Q |
121 |
ttccttgtata |
131 |
Q |
| |
|
||||| ||||| |
|
|
| T |
46638103 |
ttcctcgtata |
46638093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 46619485 - 46619381
Alignment:
| Q |
21 |
cttcaatagttttccttcggaaagtctattggtatcaatgaccgtcaactttgtcgaattccgcataatgcttttagacatatccttgctatgttttaca |
120 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| || | ||||||||||| ||| | ||||| |||||| | |||||||||||| ||||| |
|
|
| T |
46619485 |
cttcaatagttttccttcagaaagtctattggtatcaatcactattaactttgtcgacttctgtttaatggttttaggcgcatccttgctatggtttacc |
46619386 |
T |
|
| Q |
121 |
ttcct |
125 |
Q |
| |
|
||||| |
|
|
| T |
46619385 |
ttcct |
46619381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 67 - 314
Target Start/End: Original strand, 18375734 - 18375981
Alignment:
| Q |
67 |
aactttgtcgaattccgcataatgcttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcatctg |
166 |
Q |
| |
|
||||||||||||||| | |||||||||||||| ||||||||||||| ||||| ||||| ||||| | |||||||||| ||| ||||| ||||||| |
|
|
| T |
18375734 |
aactttgtcgaattctgtttaatgcttttagacgtatccttgctatggtttactttcctcgtatatttgtgccctttatattttttaccagaagcatcta |
18375833 |
T |
|
| Q |
167 |
gctcaactttacgaactgaattaacaggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattt |
266 |
Q |
| |
|
|||||||||| |||||||||| |||| || ||||||| ||||| | |||||||||||||| | |||||||||||||| ||| || |||| ||||| |
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|
| T |
18375834 |
catcaactttactcactgaattaataggctcatatttcaattcccttagatcagatggctttctgtcatgcaccaaactggcttcagtaaccatgaattt |
18375933 |
T |
|
| Q |
267 |
tatatgatctttattgtaggtaaaagatcggggcttgaggtaacattg |
314 |
Q |
| |
|
|| ||||||||| |||| ||| ||||||| ||||||||||||||||| |
|
|
| T |
18375934 |
catgtgatctttactgtaagtagaagatcgaggcttgaggtaacattg |
18375981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 92 - 314
Target Start/End: Original strand, 15769080 - 15769302
Alignment:
| Q |
92 |
ttttagacatatccttgctatgttttacattccttgtataactttgccctttatcgtttacaccagcagcatctggctcaactttacgaactgaattaac |
191 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| ||||| || ||||||||| ||| ||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
15769080 |
ttttagacatatccgtgctatggtttactttcctcgtatattttcgccctttatattttttaccagcagcatctacatcaactttactcactgaattaac |
15769179 |
T |
|
| Q |
192 |
aggcacaaatttcaaatccctgaaatcagatggctttcctttatgcaccaaactggtatcaatacccattaattttatatgatctttattgtaggtaaaa |
291 |
Q |
| |
|
||||| | ||||||| ||||| | ||||||||| ||||| | | |||||||||||||||||| |||| || |||||| |||| |||||||| ||| || |
|
|
| T |
15769180 |
aggcatagatttcaactcccttagatcagatggatttccgccacgtaccaaactggtatcaataaccatgaactttatacgatcattattgtaagtagaa |
15769279 |
T |
|
| Q |
292 |
gatcggggcttgaggtaacattg |
314 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
15769280 |
gatcggggcttgaggtaacattg |
15769302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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