View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_55 (Length: 308)

Name: NF5814_high_55
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_55
NF5814_high_55
[»] chr2 (1 HSPs)
chr2 (1-293)||(36696163-36696455)


Alignment Details
Target: chr2 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 36696455 - 36696163
Alignment:
Q  1 taaatataataatagcacnnnnnnngaagtcaaactttgttagaatttatttgactcttcattctcttcagcttatgatttgtgtgctctcctcaactat 100  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36696455 taaatataataatagcacaaaaaaagaagtcaaactttgttagaatttatttgactcttcattctattcagcttatgatttgtgtgctctcctcaactat 36696356  T
Q  101 aaataggatttatggacccaaataccttctaaagctatctgctcttccgcttttcaatagagcagaagcttcaaatatttcccatagtaaatataattaa 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36696355 aaataggatgtatggacccaaataccttctaaagctatctgctcttccagttttcaatagagcagaagcttcaaatatttcccataataaatataattaa 36696256  T
Q  201 accaaccccatataacaaaattttctaaaacttttagttagggttgtgaaatttttatagaatggtgtctgaaccaaattcaagtgtgatcac 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36696255 accaaccccatataacaaaattttctaaaacttttagttagggttgtgaaatttttatagaatggtgtctgaaccaaattcaagtgtgatcac 36696163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University