View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_56 (Length: 298)
Name: NF5814_high_56
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_56 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 21184640 - 21184884
Alignment:
| Q |
1 |
acaaatgcatatcatgtagatagaattaaacatgccactccaaataaaaagaaaactagtacagaattgaaacagacgtagtaggtatatataacgatca |
100 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
21184640 |
acaaatgcatatcatgtagatggaattaaacatgccactccaaataaaaggaaaactagtacagaattgaaacagacgtagtgggtatatataacaatca |
21184739 |
T |
|
| Q |
101 |
aatagctcataaaagattgtgacataaagtaaaaacattaagcatgagcacaaactcattagctttattattgtc---caactttaatatgcaggtagat |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||| |
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| T |
21184740 |
aatagctcataaaagattgtgacataaagtaaaaacattaagcatgagcacaaactcattagctttattagtgtccaacaacttaaatatgcaggtagat |
21184839 |
T |
|
| Q |
198 |
catgaatccatggaaatcaagtacttctgtcctgattgaatccat |
242 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21184840 |
catgaatccatggaaatcaagtacttctgtcctgattgaatccat |
21184884 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 21184957 - 21185008
Alignment:
| Q |
240 |
catttagccacaccaaattaatacatcgatgcttctgaagttctttcttttc |
291 |
Q |
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| T |
21184957 |
catttagccacaccaaattaatacatcgatgcttctgaagttctttcttttc |
21185008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 20190528 - 20190496
Alignment:
| Q |
210 |
gaaatcaagtacttctgtcctgattgaatccat |
242 |
Q |
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| T |
20190528 |
gaaatcaagtacttctgtcctgattgaatccat |
20190496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 44275040 - 44275008
Alignment:
| Q |
210 |
gaaatcaagtacttctgtcctgattgaatccat |
242 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44275040 |
gaaatcaagtacttctgtcctgattgaatccat |
44275008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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