View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_59 (Length: 296)
Name: NF5814_high_59
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_59 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 278
Target Start/End: Complemental strand, 39029856 - 39029591
Alignment:
| Q |
13 |
aatatttacattttcaatcatatgtaatcaatcactaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacgcatctaatttggtg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
39029856 |
aatatttacattttcaatcatatgtaatcaatcaccaaaatcactagaaatatttacctttaaccataactgcttttaaagtcacacatgtaatttggtg |
39029757 |
T |
|
| Q |
113 |
acagtgcaaaatttgtacactaatcgcgcgtataaaaagtaaattcatataatataaatagatatcttacacaagcgctgaaatttttctttcagctctg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39029756 |
acagtgcaaaatttgtacactaatcgcgtgtataaaaagtaaattcatataatataaatagatatcttacacatgcgctgaaatttttctttcagctctg |
39029657 |
T |
|
| Q |
213 |
tcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatccacgcagttta |
278 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39029656 |
tcttgtgctcactatttgtgatgcggaagtagaagtctggatatgtactctgatccacgcagttta |
39029591 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 170 - 277
Target Start/End: Original strand, 37859718 - 37859825
Alignment:
| Q |
170 |
atagatatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatcca |
269 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| ||||| ||||| || ||||| ||||||||| |||| ||| |||| || ||||| ||||| |||| |
|
|
| T |
37859718 |
atagatatcttacacatgcgctgaaatttttctttgagctcagtcttatgttcactgtttgtgatgcggaaatagtagtcagggtatgtgctctggtcca |
37859817 |
T |
|
| Q |
270 |
cgcagttt |
277 |
Q |
| |
|
|||||||| |
|
|
| T |
37859818 |
cgcagttt |
37859825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 174 - 277
Target Start/End: Original strand, 37863712 - 37863815
Alignment:
| Q |
174 |
atatcttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgtactctgatccacgca |
273 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | || || || ||||| ||||| |||||||| ||||||| ||||| ||||||||||||||||| || || |
|
|
| T |
37863712 |
atatcttacacatgcgctggaatttttctctgagttcagttttgtgttcactgtttgtgatacggaagtaaaagtcaggatatgtactctgatcaacaca |
37863811 |
T |
|
| Q |
274 |
gttt |
277 |
Q |
| |
|
|||| |
|
|
| T |
37863812 |
gttt |
37863815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44128347 - 44128267
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
| |
|
|||||||| ||| || ||||| ||||| || || |||||||| |||||||||||||| | ||||||||| || |||||||| |
|
|
| T |
44128347 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44128267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44132552 - 44132472
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
| |
|
|||||||| ||| || ||||| ||||| || || |||||||| |||||||||||||| | ||||||||| || |||||||| |
|
|
| T |
44132552 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44132472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 258
Target Start/End: Complemental strand, 44140974 - 44140894
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgatgtggaagtagaagtctggatatgt |
258 |
Q |
| |
|
|||||||| ||| || ||||| ||||| || || |||||||| |||||||||||||| | ||||||||| || |||||||| |
|
|
| T |
44140974 |
cttacacatgcgttggaatttctctttgagttcagtcttgtgttcactatttgtgattttgaagtagaaatcaggatatgt |
44140894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 178 - 234
Target Start/End: Complemental strand, 1491769 - 1491713
Alignment:
| Q |
178 |
cttacacaagcgctgaaatttttctttcagctctgtcttgtgctcactatttgtgat |
234 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||| || ||||| || ||||||||||| |
|
|
| T |
1491769 |
cttacacatgcgttgaaatttttctttgagctcagttttgtgttcgctatttgtgat |
1491713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University