View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_60 (Length: 288)
Name: NF5814_high_60
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_60 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 20 - 280
Target Start/End: Original strand, 11571237 - 11571497
Alignment:
| Q |
20 |
agagtcttattcaagaataacttatcagaaagcaagaagctttgaaaaagagagtacaagagcaacatttggaatcactaaggaaacaagaagaactgga |
119 |
Q |
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| T |
11571237 |
agagtctgagtcaagaataacttatcagaaagcaagaagctttggaaaagagagtacaagagcaacatttggaatcactaaggaagcaagaagaaatgga |
11571336 |
T |
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| Q |
120 |
aagtaatttgaagaagaaacatgaggaaccttggctgagcaatcaaagacaaatgctggactgctatgatagacatgatcaataaaccgcaatcttagag |
219 |
Q |
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| T |
11571337 |
aagtaatttgaagaagaaagatgaggaaccttggctgagcaatcaaagacaaatgctggactgctatgatggacatgatcaataaaccgcaatcttagag |
11571436 |
T |
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| Q |
220 |
ccttagtttcaccccctttacttcttgtttatcttaacttctaatattttgtgcctatgct |
280 |
Q |
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| T |
11571437 |
ccttagttgcacaccctttacttcttgtttatcttaacttctaatattttgtgcttatgct |
11571497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 178
Target Start/End: Original strand, 13305949 - 13306090
Alignment:
| Q |
38 |
aacttatcagaaagcaagaagctttgaaaaagagagtacaagagcaacatttggaatcactaaggaaacaagaagaactggaaagtaatttgaagaagaa |
137 |
Q |
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|||||||||||||||||||||||||| | || | | || |||||||| || || || |||||||| |||||||| || ||||| ||| |||||||| | |
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| T |
13305949 |
aacttatcagaaagcaagaagctttggagaaaaatatgcaggagcaacacttagagtctctaaggaagcaagaagagctagaaagaaatatgaagaagca |
13306048 |
T |
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| Q |
138 |
acatgaggaacctt-ggctgagcaatcaaagacaaatgctgg |
178 |
Q |
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| T |
13306049 |
acatgaggagtctttggctgagcaagcaaagacaaatgctgg |
13306090 |
T |
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