View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_62 (Length: 284)
Name: NF5814_high_62
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_62 |
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Alignment Details
Target: chr8 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 8 - 265
Target Start/End: Complemental strand, 43013944 - 43013697
Alignment:
| Q |
8 |
gagcacagactatgatcatgtagaaattaaaatttggaaaaaataattctcaagcatacnnnnnnnnnnnnnn--tgatgtgactgagaatataaaagaa |
105 |
Q |
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| T |
43013944 |
gagcacagactatgatcatgtagaaattaaaatttggaaaaaataattctcaagcatacatacatatatatatattgatgtgactgagaatataaaagaa |
43013845 |
T |
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| Q |
106 |
atggatccatacaattaactgtgtaggataaggatgataactagtatgcagttacttacaaggaaagtgatagaaagaaagaaagaaagnnnnnnnnnnn |
205 |
Q |
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| T |
43013844 |
atggatccatacaattaactgtgtaggataaggatgataactagtatgcagttacttacaaggaaagtgatagaaagaaagaaaaaaa------------ |
43013757 |
T |
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| Q |
206 |
nnggaagaaactgttagaataaggttgaggtggtagatagatagatagatataaactaag |
265 |
Q |
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| T |
43013756 |
aaggaagaaactgttagaataaggttgaggtggtagatagatagatagatataaactaag |
43013697 |
T |
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