View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_63 (Length: 284)

Name: NF5814_high_63
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_63
NF5814_high_63
[»] chr7 (20 HSPs)
chr7 (82-162)||(43002542-43002622)
chr7 (81-159)||(982217-982295)
chr7 (1-49)||(43002459-43002506)
chr7 (81-143)||(44105335-44105397)
chr7 (121-162)||(35648130-35648171)
chr7 (122-162)||(4061352-4061392)
chr7 (122-162)||(6244591-6244631)
chr7 (122-162)||(28493573-28493613)
chr7 (122-162)||(42327455-42327495)
chr7 (122-162)||(46536840-46536880)
chr7 (122-162)||(46614973-46615013)
chr7 (122-162)||(48312862-48312902)
chr7 (122-161)||(27827474-27827513)
chr7 (125-162)||(42264601-42264638)
chr7 (122-162)||(28957459-28957499)
chr7 (122-162)||(29993398-29993438)
chr7 (122-162)||(31031300-31031340)
chr7 (122-162)||(42328364-42328404)
chr7 (122-162)||(43158001-43158041)
chr7 (122-162)||(43338378-43338418)
[»] chr4 (19 HSPs)
chr4 (81-162)||(53443691-53443772)
chr4 (81-157)||(55494377-55494453)
chr4 (81-143)||(7140294-7140356)
chr4 (122-162)||(2942982-2943022)
chr4 (122-162)||(6245012-6245052)
chr4 (122-162)||(19801164-19801204)
chr4 (122-162)||(33984813-33984853)
chr4 (122-162)||(39839463-39839503)
chr4 (122-162)||(44449181-44449221)
chr4 (122-162)||(47633190-47633230)
chr4 (17-49)||(53443618-53443650)
chr4 (122-162)||(55345402-55345442)
chr4 (122-161)||(49334523-49334562)
chr4 (81-140)||(52909729-52909788)
chr4 (121-162)||(32013107-32013148)
chr4 (122-162)||(37113693-37113733)
chr4 (122-162)||(43375356-43375396)
chr4 (122-162)||(53284722-53284762)
chr4 (122-162)||(54999439-54999479)
[»] chr5 (19 HSPs)
chr5 (81-157)||(36960205-36960281)
chr5 (81-158)||(36944180-36944257)
chr5 (121-162)||(27812355-27812396)
chr5 (121-162)||(42423380-42423421)
chr5 (122-162)||(6788915-6788955)
chr5 (122-162)||(12282376-12282416)
chr5 (122-162)||(15499393-15499433)
chr5 (122-162)||(23591385-23591425)
chr5 (122-162)||(24172089-24172129)
chr5 (122-162)||(29524666-29524706)
chr5 (122-162)||(34589225-34589265)
chr5 (122-162)||(36761867-36761907)
chr5 (122-162)||(42710037-42710077)
chr5 (123-162)||(11783529-11783568)
chr5 (122-162)||(7614351-7614391)
chr5 (122-162)||(12939071-12939111)
chr5 (122-162)||(12953156-12953196)
chr5 (122-162)||(37530047-37530087)
chr5 (122-162)||(41733615-41733655)
[»] chr8 (12 HSPs)
chr8 (81-159)||(2772273-2772351)
chr8 (122-162)||(5838979-5839019)
chr8 (122-162)||(14912480-14912520)
chr8 (122-162)||(22215833-22215873)
chr8 (122-162)||(35397356-35397396)
chr8 (122-162)||(38745425-38745465)
chr8 (122-162)||(39734744-39734784)
chr8 (122-162)||(40530214-40530254)
chr8 (122-162)||(43800123-43800163)
chr8 (122-162)||(20696683-20696723)
chr8 (122-162)||(25099557-25099597)
chr8 (122-162)||(35159590-35159630)
[»] chr1 (17 HSPs)
chr1 (81-157)||(28344613-28344689)
chr1 (93-142)||(11333807-11333856)
chr1 (93-142)||(11491827-11491876)
chr1 (81-143)||(31655527-31655589)
chr1 (122-162)||(12015411-12015451)
chr1 (122-162)||(30358795-30358835)
chr1 (122-162)||(45900850-45900890)
chr1 (122-162)||(50585545-50585585)
chr1 (123-161)||(12769919-12769957)
chr1 (125-162)||(47325905-47325942)
chr1 (122-162)||(3569706-3569746)
chr1 (122-162)||(11824303-11824343)
chr1 (122-162)||(27748318-27748358)
chr1 (17-49)||(31655624-31655656)
chr1 (122-162)||(36740238-36740278)
chr1 (122-162)||(39326327-39326367)
chr1 (122-162)||(46312000-46312040)
[»] chr3 (13 HSPs)
chr3 (81-158)||(51981543-51981620)
chr3 (121-162)||(41990981-41991022)
chr3 (122-162)||(1362436-1362476)
chr3 (122-162)||(8320769-8320809)
chr3 (122-162)||(8880120-8880160)
chr3 (122-162)||(30317288-30317328)
chr3 (122-162)||(30741177-30741217)
chr3 (122-162)||(34435318-34435358)
chr3 (122-162)||(35406311-35406351)
chr3 (122-162)||(36238602-36238642)
chr3 (121-162)||(2557201-2557242)
chr3 (126-162)||(19275807-19275843)
chr3 (122-162)||(51063600-51063640)
[»] chr6 (4 HSPs)
chr6 (122-162)||(18368927-18368967)
chr6 (122-162)||(22708035-22708075)
chr6 (122-162)||(24118526-24118566)
chr6 (91-161)||(32441627-32441697)
[»] chr2 (11 HSPs)
chr2 (122-162)||(1875316-1875356)
chr2 (122-162)||(7455249-7455289)
chr2 (122-162)||(16495918-16495958)
chr2 (122-162)||(36935393-36935433)
chr2 (122-162)||(36985969-36986009)
chr2 (122-162)||(42520519-42520559)
chr2 (122-162)||(5774811-5774851)
chr2 (122-162)||(8876394-8876434)
chr2 (122-162)||(10034358-10034398)
chr2 (122-158)||(18240073-18240109)
chr2 (122-158)||(38325047-38325083)
[»] scaffold0464 (1 HSPs)
scaffold0464 (125-162)||(5386-5423)
[»] scaffold0330 (1 HSPs)
scaffold0330 (122-162)||(7736-7776)
[»] scaffold0325 (1 HSPs)
scaffold0325 (122-162)||(19090-19130)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 9e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 82 - 162
Target Start/End: Original strand, 43002542 - 43002622
Alignment:
Q  82 aattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  43002542 aattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactatttttaataagcaag 43002622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 81 - 159
Target Start/End: Original strand, 982217 - 982295
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagc 159  Q
    ||||||||| |||||||||||| | |||||||||||||||||||| |||||||||||||||||| | |||||| |||||    
T  982217 aaattaaattgtcatgtactttcaagtcattttatatttataacatctaattttaccaaacacattatttttattaagc 982295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 43002459 - 43002506
Alignment:
Q  1 gacactacttgatttatcataggttttgatgaatattcattttcaaagg 49  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||    
T  43002459 gacaatacttgattt-tcataggttttgatgaatattcattttcaaagg 43002506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Original strand, 44105335 - 44105397
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 143  Q
    |||||||||  |||||||||||||  | ||| |||||||||||||||||| ||||||||||||    
T  44105335 aaattaaattatcatgtacttttatattattctatatttataacagctaaatttaccaaacac 44105397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 35648130 - 35648171
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  35648130 taacagctaattttaccaaacacattatttttaataagcaag 35648171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 4061352 - 4061392
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  4061352 aacagctaattttaccaaacacattatttttaataagcaag 4061392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 6244591 - 6244631
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6244591 aacagctaattttaccaaacacattatttttaataagcaag 6244631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 28493613 - 28493573
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  28493613 aacagctaattttaccaaacacattatttttaataagcaag 28493573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 42327495 - 42327455
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42327495 aacagctaattttaccaaacacattatttttaataagcaag 42327455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 46536840 - 46536880
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  46536840 aacagctaattttaccaaacacattatttttaataagcaag 46536880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 46615013 - 46614973
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  46615013 aacagctaattttaccaaacacattatttttaataagcaag 46614973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 48312902 - 48312862
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  48312902 aacagctaattttaccaaacacattatttttaataagcaag 48312862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Original strand, 27827474 - 27827513
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaa 161  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  27827474 aacagctaattttaccaaacacattatttttaataagcaa 27827513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 42264638 - 42264601
Alignment:
Q  125 agctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||| | |||||||||||||||    
T  42264638 agctaattttaccaaacacattatttttaataagcaag 42264601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 28957499 - 28957459
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  28957499 aacaactaattttaccaaacacattatttttaataagcaag 28957459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 29993438 - 29993398
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  29993438 aacagctaattttaccaaagacattatttttaataagcaag 29993398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 31031340 - 31031300
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  31031340 aacaactaattttaccaaacacattatttttaataagcaag 31031300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 42328404 - 42328364
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  42328404 aacaactaattttaccaaacacattatttttaataagcaag 42328364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 43158001 - 43158041
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43158001 aacaactaattttaccaaacacattatttttaataagcaag 43158041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 43338378 - 43338418
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43338378 aacaactaattttaccaaacacattatttttaataagcaag 43338418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 81 - 162
Target Start/End: Original strand, 53443691 - 53443772
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||| |||||||||||||||    
T  53443691 aaattaaatagtcatgtacttttaggtcattttatatatataacaactaattttatcaaacacactatttttaataagcaag 53443772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 55494453 - 55494377
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 157  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| |||| ||| | ||||||||||    
T  55494453 aaattaaattgtcatgtacttttaggtcattttatatttataacaactaatcttatcaaatacattatttttaataa 55494377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 7140356 - 7140294
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 143  Q
    |||| |||| |||||||||||||| |||||||||||||||||| |||||| ||||||||||||    
T  7140356 aaataaaattgtcatgtacttttaagtcattttatatttataagagctaaatttaccaaacac 7140294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 2943022 - 2942982
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  2943022 aacagctaattttaccaaacacattatttttaataagcaag 2942982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 6245012 - 6245052
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6245012 aacagctaattttaccaaacacattatttttaataagcaag 6245052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 19801204 - 19801164
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  19801204 aacagctaattttaccaaacacattatttttaataagcaag 19801164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 33984813 - 33984853
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  33984813 aacagctaattttaccaaacacattatttttaataagcaag 33984853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 39839503 - 39839463
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39839503 aacagctaattttaccaaacacattatttttaataagcaag 39839463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 44449181 - 44449221
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  44449181 aacagctaattttaccaaacacattatttttaataagcaag 44449221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 47633230 - 47633190
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  47633230 aacagctaattttaccaaacacattatttttaataagcaag 47633190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 53443618 - 53443650
Alignment:
Q  17 tcataggttttgatgaatattcattttcaaagg 49  Q
    |||||||||||||||||||||||||||||||||    
T  53443618 tcataggttttgatgaatattcattttcaaagg 53443650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 55345402 - 55345442
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  55345402 aacagctaattttaccaaacacattatttttaataagcaag 55345442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 161
Target Start/End: Complemental strand, 49334562 - 49334523
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaa 161  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  49334562 aacagctaattttaccaaacacattatttttaataagcaa 49334523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 52909729 - 52909788
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaa 140  Q
    |||||||||  ||||||| |||||| ||||||||||||||||| |||||| |||| ||||    
T  52909729 aaattaaattatcatgtaattttagatcattttatatttataaaagctaaatttatcaaa 52909788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 32013107 - 32013148
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||| |||||||||||||||||| | |||||||||||||||    
T  32013107 taacaactaattttaccaaacacattatttttaataagcaag 32013148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 37113733 - 37113693
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  37113733 aacatctaattttaccaaacacattatttttaataagcaag 37113693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 43375356 - 43375396
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  43375356 aacaactaattttaccaaacacattatttttaataagcaag 43375396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 53284722 - 53284762
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  53284722 aacaactaattttaccaaacacattatttttaataagcaag 53284762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 54999479 - 54999439
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  54999479 aacaactaattttaccaaacacattatttttaataagcaag 54999439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 36960205 - 36960281
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 157  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  36960205 aaattaaattgtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacattatttttaataa 36960281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 36944257 - 36944180
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataag 158  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||| | |||||||||||    
T  36944257 aaattaaattgtcatgtactttgaggtcattttatatttataacagctaattttatcaaacacattatttttaataag 36944180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 27812396 - 27812355
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  27812396 taacagctaattttaccaaacacattatttttaataagcaag 27812355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Original strand, 42423380 - 42423421
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  42423380 taacagctaattttaccaaacacattatttttaataagcaag 42423421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 6788955 - 6788915
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  6788955 aacagctaattttaccaaacacattatttttaataagcaag 6788915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 12282376 - 12282416
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  12282376 aacagctaattttaccaaacacattatttttaataagcaag 12282416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 15499393 - 15499433
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  15499393 aacagctaattttaccaaacacattatttttaataagcaag 15499433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 23591385 - 23591425
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  23591385 aacagctaattttaccaaacacattatttttaataagcaag 23591425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 24172089 - 24172129
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24172089 aacagctaattttaccaaacacattatttttaataagcaag 24172129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 29524706 - 29524666
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  29524706 aacagctaattttaccaaacacattatttttaataagcaag 29524666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 34589265 - 34589225
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  34589265 aacagctaattttaccaaacacattatttttaataagcaag 34589225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 36761867 - 36761907
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36761867 aacagctaattttaccaaacacattatttttaataagcaag 36761907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 42710037 - 42710077
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42710037 aacagctaattttaccaaacacattatttttaataagcaag 42710077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 162
Target Start/End: Complemental strand, 11783568 - 11783529
Alignment:
Q  123 acagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||||| | |||||||||||||||    
T  11783568 acagctaattttaccaaacacattatttttaataagcaag 11783529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 7614391 - 7614351
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  7614391 aacagctaattttatcaaacacattatttttaataagcaag 7614351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 12939111 - 12939071
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  12939111 aacaactaattttaccaaacacattatttttaataagcaag 12939071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 12953196 - 12953156
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  12953196 aacaactaattttaccaaacacattatttttaataagcaag 12953156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 37530087 - 37530047
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | ||||||| |||||||    
T  37530087 aacagctaattttaccaaacacattatttttaacaagcaag 37530047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 41733655 - 41733615
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||| ||||||||||||||||| | |||||||||||||||    
T  41733655 aacagttaattttaccaaacacattatttttaataagcaag 41733615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 159
Target Start/End: Complemental strand, 2772351 - 2772273
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagc 159  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||    
T  2772351 aaattaaattgtcatgtacttttaggtcattttatatttataacagctagttttaccaaacacattatttttaataagc 2772273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5838979 - 5839019
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  5838979 aacagctaattttaccaaacacattatttttaataagcaag 5839019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 14912480 - 14912520
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  14912480 aacagctaattttaccaaacacattatttttaataagcaag 14912520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 22215833 - 22215873
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22215833 aacagctaattttaccaaacacattatttttaataagcaag 22215873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 35397396 - 35397356
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  35397396 aacagctaattttaccaaacacattatttttaataagcaag 35397356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 38745465 - 38745425
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  38745465 aacagctaattttaccaaacacattatttttaataagcaag 38745425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 39734744 - 39734784
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  39734744 aacagctaattttaccaaacacattatttttaataagcaag 39734784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 40530214 - 40530254
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  40530214 aacagctaattttaccaaacacattatttttaataagcaag 40530254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 43800163 - 43800123
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  43800163 aacagctaattttaccaaacacattatttttaataagcaag 43800123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 20696723 - 20696683
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  20696723 aacagctaattttaccaaacacattatttttaataaccaag 20696683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 25099597 - 25099557
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  25099597 aacagctaattttaccaaacacattatttttaataaacaag 25099557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 35159630 - 35159590
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  35159630 aacaactaattttaccaaacacattatttttaataagcaag 35159590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 81 - 157
Target Start/End: Original strand, 28344613 - 28344689
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataa 157  Q
    ||||||||| ||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| | ||||||||||    
T  28344613 aaattaaattgtcatatacttttaagtcattttatatttataacagttaattttaccaaacacattatttttaataa 28344689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 11333807 - 11333856
Alignment:
Q  93 catgtacttttaggtcattttatatttataacagctaattttaccaaaca 142  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11333807 catgtacttttaggtcattttatatttataacagctaaatttaccaaaca 11333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 93 - 142
Target Start/End: Original strand, 11491827 - 11491876
Alignment:
Q  93 catgtacttttaggtcattttatatttataacagctaattttaccaaaca 142  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  11491827 catgtacttttaggtcattttatatttataacagctaaatttaccaaaca 11491876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 31655589 - 31655527
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacac 143  Q
    |||| |||| |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||    
T  31655589 aaataaaattgtcatgtaattttaggtcattttatatttataacagttaaatttaccaaacac 31655527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 12015411 - 12015451
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  12015411 aacagctaattttaccaaacacattatttttaataagcaag 12015451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 30358795 - 30358835
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30358795 aacagctaattttaccaaacacattatttttaataagcaag 30358835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 45900850 - 45900890
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  45900850 aacagctaattttaccaaacacattatttttaataagcaag 45900890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 50585585 - 50585545
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  50585585 aacagctaattttaccaaacacattatttttaataagcaag 50585545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 12769957 - 12769919
Alignment:
Q  123 acagctaattttaccaaacacactgtttttaataagcaa 161  Q
    |||||||||||||||||||||| | ||||||||||||||    
T  12769957 acagctaattttaccaaacacattatttttaataagcaa 12769919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Complemental strand, 47325942 - 47325905
Alignment:
Q  125 agctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||| | |||||||||||||||    
T  47325942 agctaattttaccaaacacattatttttaataagcaag 47325905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 3569746 - 3569706
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  3569746 aacaactaattttaccaaacacattatttttaataagcaag 3569706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 11824303 - 11824343
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  11824303 aacatctaattttaccaaacacattatttttaataagcaag 11824343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 27748318 - 27748358
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||| ||| | |||||||||||||||    
T  27748318 aacagctaattttaccaaatacattatttttaataagcaag 27748358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 49
Target Start/End: Complemental strand, 31655656 - 31655624
Alignment:
Q  17 tcataggttttgatgaatattcattttcaaagg 49  Q
    ||||||||||||||||||||| |||||||||||    
T  31655656 tcataggttttgatgaatatttattttcaaagg 31655624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 36740238 - 36740278
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||| |||||||| | |||||||||||||||    
T  36740238 aacagctaattttatcaaacacattatttttaataagcaag 36740278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 39326327 - 39326367
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||| ||||    
T  39326327 aacagctaattttaccaaacacattatttttaataaacaag 39326367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 46312040 - 46312000
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||| | | |||||||||||||||    
T  46312040 aacagctaattttaccaaacatattatttttaataagcaag 46312000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 51981543 - 51981620
Alignment:
Q  81 aaattaaatagtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataag 158  Q
    |||||||||  |||||||||||||||||||||||||||||||||  | ||||||| |||||||| | |||||||||||    
T  51981543 aaattaaattatcatgtacttttaggtcattttatatttataactaccaattttatcaaacacattatttttaataag 51981620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 41991022 - 41990981
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||||||| | |||||||||||||||    
T  41991022 taacagctaattttaccaaacacattatttttaataagcaag 41990981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 1362436 - 1362476
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  1362436 aacagctaattttaccaaacacattatttttaataagcaag 1362476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 8320809 - 8320769
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8320809 aacagctaattttaccaaacacattatttttaataagcaag 8320769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 8880120 - 8880160
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  8880120 aacagctaattttaccaaacacattatttttaataagcaag 8880160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 30317328 - 30317288
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30317328 aacagctaattttaccaaacacattatttttaataagcaag 30317288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 30741217 - 30741177
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  30741217 aacagctaattttaccaaacacattatttttaataagcaag 30741177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 34435358 - 34435318
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  34435358 aacagctaattttaccaaacacattatttttaataagcaag 34435318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 35406311 - 35406351
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  35406311 aacagctaattttaccaaacacattatttttaataagcaag 35406351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 36238602 - 36238642
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36238602 aacagctaattttaccaaacacattatttttaataagcaag 36238642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 162
Target Start/End: Complemental strand, 2557242 - 2557201
Alignment:
Q  121 taacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||| |||||||| | |||||||||||||||    
T  2557242 taacagctaattttatcaaacacattatttttaataagcaag 2557201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 19275807 - 19275843
Alignment:
Q  126 gctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||| | |||||||||||||||    
T  19275807 gctaattttaccaaacacattatttttaataagcaag 19275843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 51063600 - 51063640
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  51063600 aacaactaattttaccaaacacattatttttaataagcaag 51063640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 18368967 - 18368927
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  18368967 aacagctaattttaccaaacacattatttttaataagcaag 18368927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 22708035 - 22708075
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  22708035 aacagctaattttaccaaacacattatttttaataagcaag 22708075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 24118566 - 24118526
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  24118566 aacagctaattttaccaaacacattatttttaataagcaag 24118526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 32441697 - 32441627
Alignment:
Q  91 gtcatgtacttttaggtcattttatatttataacagctaattttaccaaacacactgtttttaataagcaa 161  Q
    |||||||| |||||||| ||||||||||||||| || |||||||  |||| | | | ||||||||||||||    
T  32441697 gtcatgtatttttaggttattttatatttataagagttaattttgtcaaatatattatttttaataagcaa 32441627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 1875356 - 1875316
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  1875356 aacagctaattttaccaaacacattatttttaataagcaag 1875316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 7455249 - 7455289
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  7455249 aacagctaattttaccaaacacattatttttaataagcaag 7455289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 16495958 - 16495918
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  16495958 aacagctaattttaccaaacacattatttttaataagcaag 16495918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 36935433 - 36935393
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36935433 aacagctaattttaccaaacacattatttttaataagcaag 36935393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 36986009 - 36985969
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  36986009 aacagctaattttaccaaacacattatttttaataagcaag 36985969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 42520519 - 42520559
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    ||||||||||||||||||||||| | |||||||||||||||    
T  42520519 aacagctaattttaccaaacacattatttttaataagcaag 42520559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 5774811 - 5774851
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  5774811 aacaactaattttaccaaacacattatttttaataagcaag 5774851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 8876394 - 8876434
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  8876394 aacaactaattttaccaaacacattatttttaataagcaag 8876434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 10034358 - 10034398
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  10034358 aacaactaattttaccaaacacattatttttaataagcaag 10034398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 18240073 - 18240109
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataag 158  Q
    ||||||||||||||||||||||| | |||||||||||    
T  18240073 aacagctaattttaccaaacacattatttttaataag 18240109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 158
Target Start/End: Original strand, 38325047 - 38325083
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataag 158  Q
    ||||||||||||||||||||||| | |||||||||||    
T  38325047 aacagctaattttaccaaacacattatttttaataag 38325083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 162
Target Start/End: Original strand, 5386 - 5423
Alignment:
Q  125 agctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||||||||||||||||||| | |||||||||||||||    
T  5386 agctaattttaccaaacacattatttttaataagcaag 5423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0330 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 7736 - 7776
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  7736 aacaactaattttaccaaacacattatttttaataagcaag 7776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 162
Target Start/End: Original strand, 19090 - 19130
Alignment:
Q  122 aacagctaattttaccaaacacactgtttttaataagcaag 162  Q
    |||| |||||||||||||||||| | |||||||||||||||    
T  19090 aacaactaattttaccaaacacattatttttaataagcaag 19130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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