View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_65 (Length: 282)
Name: NF5814_high_65
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_65 |
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Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 40505337 - 40505607
Alignment:
| Q |
4 |
accgtgattttatcgatctaacggtctatgtaaacaaacactaattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttca |
102 |
Q |
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| T |
40505337 |
accgtgattttatcgatctaatggtctatgtaaacaaacactaattattagcataatgtatgaaaagagaataacaagtccgaggacagaaattgtgtca |
40505436 |
T |
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| Q |
103 |
aggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttc |
202 |
Q |
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| T |
40505437 |
aggactcaagtggaagaagcaatagaacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttc |
40505536 |
T |
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| Q |
203 |
caaattctatagttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataat |
273 |
Q |
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| T |
40505537 |
caaattctatagttaaattacttgttgattggtgcttgaagggtgtacaacaaaagaactatgagaataat |
40505607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 29 - 273
Target Start/End: Original strand, 22137854 - 22138098
Alignment:
| Q |
29 |
ctatgtaaacaaacactaattattagcataatgtatgaaaagagaataaca-gtccgaggacagaaattgtttcaaggactcaagtggaagaagcaatag |
127 |
Q |
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| T |
22137854 |
ctatgtaaacaaacactaattattagcata-tgtatgaaaagagaataacaagtccgaggacagaaattgtgtcaaggactcaagtggaagaagcaatag |
22137952 |
T |
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| Q |
128 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtgtgagacaaatactttcacacttccaaattctatagttaaattacttgt |
227 |
Q |
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| T |
22137953 |
aacaggaatagaaacaggagaagccatcaattacaataatatgcattttgtatgagacaaatactttgacacttccaaattctatagttaaattacttgt |
22138052 |
T |
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| Q |
228 |
tgattggtgcttgaagggtgtacaacaaaagaactatgagaataat |
273 |
Q |
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| T |
22138053 |
tgattggtgcttgaagggtgtacaacaaaagaactatgagaataat |
22138098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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