View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_high_66 (Length: 270)

Name: NF5814_high_66
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_high_66
NF5814_high_66
[»] chr3 (15 HSPs)
chr3 (58-225)||(8431406-8431573)
chr3 (82-225)||(43073034-43073178)
chr3 (79-225)||(31525360-31525507)
chr3 (88-225)||(28934724-28934861)
chr3 (82-219)||(10454279-10454422)
chr3 (73-209)||(44656229-44656369)
chr3 (82-201)||(47820897-47821022)
chr3 (82-219)||(9358743-9358883)
chr3 (88-225)||(52076066-52076209)
chr3 (82-205)||(53349401-53349527)
chr3 (88-225)||(20701152-20701292)
chr3 (88-212)||(28956952-28957079)
chr3 (88-219)||(42881885-42882019)
chr3 (82-201)||(46750212-46750333)
chr3 (82-141)||(55166895-55166955)
[»] chr1 (13 HSPs)
chr1 (32-209)||(31833845-31834019)
chr1 (79-224)||(12172951-12173097)
chr1 (82-200)||(46757306-46757425)
chr1 (82-219)||(26990601-26990739)
chr1 (82-225)||(19472797-19472944)
chr1 (88-225)||(8462958-8463097)
chr1 (82-201)||(42442019-42442142)
chr1 (82-219)||(47028931-47029072)
chr1 (82-225)||(38548673-38548821)
chr1 (88-207)||(41955891-41956016)
chr1 (82-172)||(43268645-43268739)
chr1 (167-225)||(28447805-28447863)
chr1 (82-219)||(26384960-26385100)
[»] chr7 (13 HSPs)
chr7 (82-219)||(46691839-46691981)
chr7 (88-225)||(30655586-30655727)
chr7 (88-225)||(22197675-22197816)
chr7 (88-225)||(22240005-22240146)
chr7 (88-208)||(36615808-36615927)
chr7 (79-224)||(31424761-31424912)
chr7 (88-225)||(1039051-1039191)
chr7 (88-201)||(49035865-49035983)
chr7 (85-207)||(41702867-41702992)
chr7 (88-197)||(33320710-33320817)
chr7 (148-225)||(42598053-42598130)
chr7 (79-219)||(32678937-32679083)
chr7 (82-219)||(43397640-43397781)
[»] chr2 (6 HSPs)
chr2 (76-212)||(38908663-38908800)
chr2 (82-209)||(41419617-41419748)
chr2 (82-219)||(14732334-14732473)
chr2 (82-200)||(41378216-41378332)
chr2 (88-225)||(22649053-22649193)
chr2 (148-201)||(43356750-43356803)
[»] chr8 (12 HSPs)
chr8 (82-225)||(40930818-40930961)
chr8 (82-219)||(25829259-25829399)
chr8 (89-225)||(13959207-13959347)
chr8 (82-221)||(24200614-24200753)
chr8 (82-226)||(5200469-5200615)
chr8 (82-218)||(22839250-22839391)
chr8 (82-225)||(38086402-38086551)
chr8 (88-155)||(10124866-10124935)
chr8 (176-225)||(7845135-7845184)
chr8 (82-225)||(30836116-30836272)
chr8 (148-224)||(44362918-44362994)
chr8 (161-225)||(584123-584187)
[»] chr4 (9 HSPs)
chr4 (88-209)||(16572074-16572198)
chr4 (90-224)||(47571560-47571694)
chr4 (123-219)||(15186975-15187072)
chr4 (82-225)||(32183275-32183425)
chr4 (85-219)||(55133102-55133233)
chr4 (82-219)||(25641263-25641407)
chr4 (81-219)||(16662301-16662441)
chr4 (83-219)||(42390766-42390906)
chr4 (175-225)||(45511390-45511440)
[»] chr5 (10 HSPs)
chr5 (82-201)||(23172985-23173107)
chr5 (82-207)||(22887211-22887337)
chr5 (82-225)||(9931785-9931935)
chr5 (73-207)||(25539810-25539947)
chr5 (88-225)||(10431063-10431204)
chr5 (88-208)||(819134-819254)
chr5 (82-224)||(3677779-3677924)
chr5 (97-225)||(42241577-42241708)
chr5 (88-140)||(2292168-2292222)
chr5 (167-225)||(9597742-9597800)
[»] chr6 (8 HSPs)
chr6 (88-225)||(33112703-33112844)
chr6 (82-219)||(10246910-10247049)
chr6 (88-226)||(11546772-11546912)
chr6 (81-216)||(6575720-6575860)
chr6 (82-224)||(15859093-15859244)
chr6 (88-225)||(34761167-34761306)
chr6 (167-210)||(12754422-12754465)
chr6 (82-141)||(33984753-33984814)
[»] scaffold0209 (1 HSPs)
scaffold0209 (161-225)||(12883-12947)
[»] scaffold0343 (1 HSPs)
scaffold0343 (167-223)||(7956-8012)


Alignment Details
Target: chr3 (Bit Score: 140; Significance: 2e-73; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 58 - 225
Target Start/End: Complemental strand, 8431573 - 8431406
Alignment:
Q  58 ccggtagttagtgccttagtgttagggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccat 157  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  8431573 ccggtagttagtgccttagtgttggggtggtttttaaggggtttttgttcgagccggtgttttgttgcaaccgatttccccttgtgtttattttttccat 8431474  T
Q  158 ccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||    
T  8431473 ccgagcttgttagtgcatcttgcacgggcttcttgatcaataatattttgccgtttcaaaaaaaaaaa 8431406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 43073178 - 43073034
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgc 180  Q
    |||||||||||||||||||||| ||||||||||||||||  |||||||||||||||||||| || | ||||||||| || ||||| ||||||||||||||    
T  43073178 gggtggtttttaaggggtttttgttcgagccggtgttttaaggcaaccgatttccccttgtattcttttttttccacccaagcttattagtgcatcttgc 43073079  T
Q  181 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||||||| |||||||||||| |||||||| |||||||| |||||    
T  43073078 acgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 43073034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 79 - 225
Target Start/End: Original strand, 31525360 - 31525507
Alignment:
Q  79 ttagggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 177  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  31525360 ttagggtggtttttaaggggtttttgttcgagccgttgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 31525459  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  31525460 tgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 31525507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 28934861 - 28934724
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggc 186  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||  ||||| |||| |||||||| ||||||| ||||||||||||    
T  28934861 tttttaaggggtttttgttcgagccggtgttt-gtggcaaccgatttccccttgttttgttttttctccacccgagcttattagtgcttcttgcacgggc 28934763  T
Q  187 ttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    || |||||||||||| ||||||   |||||||| |||||    
T  28934762 ttgttggttaataatattttgctaattcaaaaaaaaaaa 28934724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 10454279 - 10454422
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt-----ccatccgagcttgttagtgcat 175  Q
    |||||||||||||||||||||| || |||||||  || |||||||||||||||||||||||| | ||||||||     ||| |||||||| |||||||      
T  10454279 gggtggtttttaaggggtttttgtttgagccggctttcttgtggcaaccgatttccccttgtatgtattttttttttcccacccgagcttattagtgctc 10454378  T
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    ||||||||||||| |||||||||||| ||||||| |||||||||    
T  10454379 cttgcacgggcttgttggttaataatattttgccatttcaaaaa 10454422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 73 - 209
Target Start/End: Complemental strand, 44656369 - 44656229
Alignment:
Q  73 ttagtgttagggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgt---gtttattttt-tccatccgagcttgtt 168  Q
    ||||| ||||||||||||||||||| ||||| |||||| | ||||| | ||||||||||||| |||||||   |||| ||||| |||| |||||||| ||    
T  44656369 ttagttttagggtggtttttaagggatttttgttcgagtctgtgttatatggcaaccgattttcccttgtatggtttttttttctccacccgagcttatt 44656270  T
Q  169 agtgcatcttgcacgggcttcttggttaataattttttgcc 209  Q
     ||||||||||||||||||| |||||||||||| |||||||    
T  44656269 tgtgcatcttgcacgggcttgttggttaataatattttgcc 44656229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 47820897 - 47821022
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 175  Q
    ||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||| | | ||||||||    ||| |||||||| ||||||| |    
T  47820897 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgtatttttttcctccacccgagcttattagtgcgt 47820996  T
Q  176 cttgcacgggcttcttggttaataat 201  Q
    ||||||||||||| ||||||||||||    
T  47820997 cttgcacgggcttgttggttaataat 47821022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 9358883 - 9358743
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatctt 178  Q
    ||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||| | | || |||| |||| || ||||| ||||| | |||     
T  9358883 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctatgtttttttctccacccaagcttattagtacttctc 9358784  T
Q  179 gcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||| |||| ||||||| |||||||| ||||||||    
T  9358783 gcacgggcttgttgggtaataatattttgccgattcaaaaa 9358743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 52076066 - 52076209
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt------tccatccgagcttgttagtgcatcttgca 181  Q
    |||||||||||||||| |||||||   |||||| |||||||||||| |||||||| | |||||||      |||| |||||||| ||||||| ||| |||    
T  52076066 tttttaaggggtttttgttcgagcgtttgttttatggcaaccgattaccccttgtttgtattttttttttctccacccgagcttattagtgcttctcgca 52076165  T
Q  182 cgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||| ||||||| |||| |||||||| |||||||| |||||    
T  52076166 cgggcttgttggttagtaatattttgccgattcaaaaaaaaaaa 52076209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 205
Target Start/End: Original strand, 53349401 - 53349527
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatctt 178  Q
    |||||||||||||||||||||| || |||||||||||| || |||||||||||| ||||||  |||||| |||| ||| || || || ||||||| ||||    
T  53349401 gggtggtttttaaggggtttttgtttgagccggtgtttgtgcggcaaccgattttcccttgtatgtttaattttcccacccaagtttattagtgcttctt 53349500  T
Q  179 gcacgggcttcttggttaataattttt 205  Q
    ||| | |||| ||||||||||||||||    
T  53349501 gcatgagcttgttggttaataattttt 53349527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 20701152 - 20701292
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatcttgcacgg 184  Q
    |||||||||||||||| |||||||||  ||| |||||||| |||||||||||||| | |||||||   | || |||||||| ||||||| ||||| ||||    
T  20701152 tttttaaggggtttttgttcgagccgtagttgtgtggcaatcgatttccccttgtttgtatttttttcttcacccgagcttattagtgcttcttgtacgg 20701251  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||  |||||||||||| |||||| | || ||||| |||||    
T  20701252 gctcgttggttaataatattttgctgatttaaaaaaaaaaa 20701292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 212
Target Start/End: Original strand, 28956952 - 28957079
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtgcatcttgcacgg 184  Q
    |||| ||||||||||| ||||||||||||||| ||||||||||||||||||||  | ||||| |||||  || |||||||| | ||||  ||||||||||    
T  28956952 ttttaaaggggtttttgttcgagccggtgtttgtgtggcaaccgatttccccttctttgtttttttttctcacccgagcttatcagtgtttcttgcacgg 28957051  T
Q  185 gcttcttggttaataattttttgccgtt 212  Q
     ||| |||||||||||| ||||| ||||    
T  28957052 acttgttggttaataatattttgtcgtt 28957079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 219
Target Start/End: Original strand, 42881885 - 42882019
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttg----tgtttattttttccatccgagcttgttagtgcatcttgcacg 183  Q
    ||||||||| |||||| || |||||||||| ||||||||| |||||||||||||    ||| | ||||||||  |||||||| ||||||||||||| |||    
T  42881885 tttttaaggcgtttttgtttgagccggtgtattgtggcaatcgatttccccttgtatttgtgttttttttcctcccgagctttttagtgcatcttgtacg 42881984  T
Q  184 ggcttcttggttaataattttttgccgtttcaaaaa 219  Q
     |||| |||| ||||||| |||||||| || |||||    
T  42881985 agcttgttgg-taataatattttgccgatttaaaaa 42882019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 46750212 - 46750333
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc---catccgagcttgttagtgcatctt 178  Q
    |||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| || |||| |||  ||||||   || |||||||| ||||||||||||    
T  46750212 gggtggtttttaaggg-tttttgttcgaaccggtgttttgcggcaaccgattttcctttgtattttctttttctttcacccgagcttattagtgcatctt 46750310  T
Q  179 gcacgggcttcttggttaataat 201  Q
    | || |  || ||||||||||||    
T  46750311 gtacagatttgttggttaataat 46750333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 141
Target Start/End: Complemental strand, 55166955 - 55166895
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg 141  Q
    |||||||||||||||||||||| ||||||||   |||| || |||||||||||||||||||    
T  55166955 gggtggtttttaaggggtttttgttcgagccaaagtttgtgcggcaaccgatttccccttg 55166895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 32 - 209
Target Start/End: Original strand, 31833845 - 31834019
Alignment:
Q  32 atatgtctgaggcattattgttgtgtccggtagttagtgccttagtgttagggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccga 131  Q
    ||||||||| | ||||| | ||||| | ||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  31833845 atatgtctgcgtcattacttttgtgactggtagtttgtgccttagtgttggggtggtttttaaggggtttttgttcgagccggtgttatgtggcaaccga 31833944  T
Q  132 tttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgcc 209  Q
    ||| ||||||| |   |||||| || |||||||||||||||||||||||||||  || |||||||||||| |||||||    
T  31833945 ttttcccttgtat---tttttttcacccgagcttgttagtgcatcttgcacggatttgttggttaataatattttgcc 31834019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 224
Target Start/End: Original strand, 12172951 - 12173097
Alignment:
Q  79 ttagggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 177  Q
    ||||||||||||||||||||||||| ||||||| | ||||| ||||||||||||||||||||||| | | ||||||||| || ||||| ||||||| |||    
T  12172951 ttagggtggtttttaaggggtttttgttcgagctgatgtttgtgtggcaaccgatttccccttgtttgttttttttccacccaagcttattagtgcttct 12173050  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 224  Q
    ||||||||||| |||||||||||| |||||||| |||||||| ||||    
T  12173051 tgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaa 12173097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 200
Target Start/End: Original strand, 46757306 - 46757425
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 180  Q
    ||||||||||||| |||||||| ||||||| |||||| ||||||||| |||||||||||| | ||  ||||||||| | |||||| ||||||||||||||    
T  46757306 gggtggtttttaaagggtttttgttcgagctggtgttattgtggcaatcgatttccccttatattgtttttttccacctgagcttattagtgcatcttgc 46757405  T
Q  181 acgggcttcttggttaataa 200  Q
    |||||||| |||||||||||    
T  46757406 acgggcttgttggttaataa 46757425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 26990601 - 26990739
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 180  Q
    |||||||||||||||| ||||| || ||||||||| || || ||||| |||||| ||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  26990601 gggtggtttttaagggatttttgtttgagccggtgcttgtgcggcaatcgattttcccttgtatgttttttttccacccaagcttattagtgcttcttgc 26990700  T
Q  181 acgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||| |||||||||||| |||||||| ||||||||    
T  26990701 acgggcttattggttaataatattttgccgattcaaaaa 26990739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 19472797 - 19472944
Alignment:
Q  82 gggtggtttttaagggg-tttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatct 177  Q
    ||||||||||||| ||| ||||| |||||||||| |||| | ||||||| ||||||||||| | | |||||||||  || |||||||| ||||||| |||    
T  19472797 gggtggtttttaaagggatttttgttcgagccggagtttgtatggcaactgatttccccttctttgtattttttctccacccgagcttattagtgcgtct 19472896  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||||||| |||||||||||| |||||||| |||||||| |||||    
T  19472897 tgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 19472944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 8463097 - 8462958
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc--catccgagcttgttagtgcatcttgcacgg 184  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||| ||||||| | |||||||||  || |||||||  ||||||| |||||||||     
T  8463097 tttttaaggggtttttgttcgagccgacgtttttgtggcaaccgattttcccttgtatgtattttttctccacccgagctaattagtgcttcttgcacga 8462998  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| |||||||||||| |||| || ||||||||| |||||    
T  8462997 gcttgttggttaataatatttt-ccatttcaaaaaaaaaaa 8462958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 42442142 - 42442019
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 177  Q
    |||||||||||||||||||||| |||||| |||||||||  |||||||||||||||| |||| |   || |||||| || |||||||| ||||||| |||    
T  42442142 gggtggtttttaaggggtttttgttcgagtcggtgttttaatggcaaccgatttcccgttgtttgtattttttttttcacccgagcttattagtgcttct 42442043  T
Q  178 tgcacgggcttcttggttaataat 201  Q
    ||||||| ||| ||||||||||||    
T  42442042 tgcacggacttgttggttaataat 42442019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 47028931 - 47029072
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtg-ttttgtggcaaccgatttccccttgtgttta-----ttttttccatccgagcttgttagtgcat 175  Q
    |||| ||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| ||||     ||||||||| |||||||| ||| ||| |    
T  47028931 gggtagtttttaaggggtttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatttatgtttttttttccacccgagcttattaatgcgt 47029030  T
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    ||||||||  ||| ||||||  |||| ||| |||||||||||||    
T  47029031 cttgcacgaacttgttggtt--taatatttggccgtttcaaaaa 47029072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 38548673 - 38548821
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttatttttt--ccatccgagcttgttagtgcatc 176  Q
    |||||||||||||||||  ||| ||||||||    ||| | ||||||||||||||||||||  ||||| ||||||  ||| |||||||| ||||||| ||    
T  38548673 gggtggtttttaaggggggtttgttcgagccaaattttgtatggcaaccgatttccccttgcttgtttttttttttcccacccgagcttattagtgcgtc 38548772  T
Q  177 ttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||||| || |||||||||||| |||||||| |||||||| |||||    
T  38548773 ttgcacgggtttgttggttaataatattttgccgattcaaaaaaaaaaa 38548821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 207
Target Start/End: Complemental strand, 41956016 - 41955891
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgtt-ttgtggcaaccgatttccccttgtgt-----ttattttttccatccgagcttgttagtgcatcttgca 181  Q
    |||||||||| ||||| |||||||||||||| || ||||||||||||||||||||| |     || |||| ||||||| ||||| |||||| ||||||||    
T  41956016 tttttaagggatttttgttcgagccggtgttattatggcaaccgatttccccttgtattttagtttttttctccatccaagcttattagtgtatcttgca 41955917  T
Q  182 cgggcttcttggttaataattttttg 207  Q
    ||   || |||||||||||| |||||    
T  41955916 cgaatttgttggttaataatattttg 41955891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Complemental strand, 43268739 - 43268645
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttattttttccatccgagcttgttagtg 172  Q
    ||||||||||||| ||||||||| ||||||||||||||| || |||||||||||||||||  | ||||| |||| |||| |||||||| ||||||    
T  43268739 gggtggtttttaaaggggtttttgttcgagccggtgtttgtgcggcaaccgatttccccttctttgttttttttctccacccgagcttattagtg 43268645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 167 - 225
Target Start/End: Original strand, 28447805 - 28447863
Alignment:
Q  167 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||| |||||||||||||| |||||||||||| |||||||| |||||||| |||||    
T  28447805 ttagtgcttcttgcacgggcttgttggttaataatattttgccgattcaaaaaaaaaaa 28447863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 26384960 - 26385100
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgt---ttattttttccatccgagcttgttagtgcatct 177  Q
    ||||||||||||||||| |||| || |||| ||||||| | || ||||||||||||| |||| |   || ||||||||| || ||||| |||| || |||    
T  26384960 gggtggtttttaagggggttttgtttgagctggtgtttgtatgacaaccgatttccctttgtttgtatttttttttccacccaagcttattagcgcttct 26385059  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    || |||||||| | |||||||||| |||| | ||||||||||    
T  26385060 tg-acgggcttgtcggttaataatattttactgtttcaaaaa 26385100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 86; Significance: 4e-41; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 46691981 - 46691839
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcatc 176  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||||    ||| |||||||||||||||| ||    
T  46691981 gggtggtttttaaggggtttttgttcgagccggtgtttatgtggcaaccgatttccccttgtatgtattttttttctccacccgagcttgttagtgcttc 46691882  T
Q  177 ttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||||| |||||||||||| |||||||| ||||||||    
T  46691881 ttgcacgggcttgttggttaataatattttgccgattcaaaaa 46691839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 30655727 - 30655586
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtg--gcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacg 183  Q
    |||||||| ||||||| |||||| || | |||||||  ||||||||||||||||||| | ||||||||  ||| |||||||| ||||||| |||||||||    
T  30655727 tttttaagaggtttttgttcgagtcgatattttgtgtggcaaccgatttccccttgtttgtattttttttccacccgagcttattagtgcgtcttgcacg 30655628  T
Q  184 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  30655627 ggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 30655586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 22197675 - 22197816
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 182  Q
    |||||||||||||||| |||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22197675 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22197773  T
Q  183 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22197774 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22197816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 22240146 - 22240005
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttg-----tgtttattttttccatccgagcttgttagtgcatcttgcac 182  Q
    |||||||||||||||| |||||| ||||||||||||| || |||||||||||||     ||||| ||||||||| |||||||| |||||||| |||||||    
T  22240146 tttttaaggggtttttgttcgagacggtgttttgtggtaatcgatttccccttgtaatttgttt-ttttttccacccgagctttttagtgcaccttgcac 22240048  T
Q  183 gggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    || ||| |||||||||||| |||| | |||||||||| |||||    
T  22240047 ggacttgttggttaataatattttacagtttcaaaaaaaaaaa 22240005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 36615927 - 36615808
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggct 187  Q
    ||||||| |||||||| ||||||| || |||| |||||||||||||||||||||| ||  ||||||||| |||||||| ||||||| |||||||||||||    
T  36615927 tttttaaagggtttttgttcgagctggagttt-gtggcaaccgatttccccttgttttgtttttttccacccgagcttattagtgcttcttgcacgggct 36615829  T
Q  188 tcttggttaataattttttgc 208  Q
    | |||| ||||||| ||||||    
T  36615828 tgttgggtaataatattttgc 36615808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 79 - 224
Target Start/End: Complemental strand, 31424912 - 31424761
Alignment:
Q  79 ttagggtggttttt--aaggggtttttattcgagccggtgttttg--tggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtg 172  Q
    ||||||||||||||  |||||||||||  |||||||||||||| |  ||||||||||||||||||| |  |||| |||| |||| || ||||| ||||||    
T  31424912 ttagggtggttttttaaaggggtttttgatcgagccggtgtttcgaatggcaaccgatttccccttctttgttttttttctccacccaagcttattagtg 31424813  T
Q  173 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 224  Q
      ||||||||||| || |||||||||||| |||||||| |||||||| ||||    
T  31424812 tttcttgcacgggtttgttggttaataatattttgccgcttcaaaaaaaaaa 31424761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 1039191 - 1039051
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttttccatccgagcttgttagtgcatcttgcacgg 184  Q
    |||||||||||||||| ||||||||   |||| | | ||||||||||| |||||||  |||| |||| |||| |||||||| ||||||| ||||||||||    
T  1039191 tttttaaggggtttttgttcgagccaaagtttgtattgcaaccgattttcccttgtttgttttttttatccacccgagcttattagtgcttcttgcacgg 1039092  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| | |||||||||| ||||||||||| ||||| |||||    
T  1039091 gcttgtcggttaataatattttgccgtttgaaaaaaaaaaa 1039051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 49035983 - 49035865
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgt----ttattttttccatccgagcttgttagtgcatcttgcac 182  Q
    |||||||||||||||| ||||| ||||||||| ||||||||||||||||||||||| |    || |||| |||| |||||||| ||||||| ||||| ||    
T  49035983 tttttaaggggtttttgttcgaaccggtgtttatgtggcaaccgatttccccttgtttgtaatttttttctccacccgagcttattagtgcttcttgtac 49035884  T
Q  183 gggcttcttggttaataat 201  Q
    || ||| ||||||||||||    
T  49035883 ggacttgttggttaataat 49035865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 207
Target Start/End: Original strand, 41702867 - 41702992
Alignment:
Q  85 tggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccgagcttgttagtgcatcttgca 181  Q
    ||||||||||||||||||| ||||||||||||||| || ||||||||| |||||||||  ||||| |||| |||| || | ||| |||||||  ||||||    
T  41702867 tggtttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgacttccccttgtatgttttttttctccacccaaacttattagtgctccttgca 41702966  T
Q  182 cgggcttcttggttaataattttttg 207  Q
    ||||||  |||||| ||||| |||||    
T  41702967 cgggctagttggttgataatattttg 41702992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 197
Target Start/End: Original strand, 33320710 - 33320817
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacgggc 186  Q
    ||||||||||| |||| ||||||||||||||| |  ||||||| |||||||||||| |||   ||| ||| |||||||| ||||||| ||||||||||||    
T  33320710 tttttaagggggttttgttcgagccggtgtttgtaaggcaaccaatttccccttgttttt---tttcccacccgagcttattagtgcttcttgcacgggc 33320806  T
Q  187 ttcttggttaa 197  Q
    || ||||||||    
T  33320807 ttgttggttaa 33320817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 225
Target Start/End: Original strand, 42598053 - 42598130
Alignment:
Q  148 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| |||| || ||||| ||||||| ||||||||||| || |||||||||||| ||||||||||| ||||| |||||    
T  42598053 ttttctccacccaagcttattagtgcttcttgcacgggtttgttggttaataatattttgccgttttaaaaaaaaaaa 42598130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 219
Target Start/End: Original strand, 32678937 - 32679083
Alignment:
Q  79 ttagggtggtttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttc-----catccgagcttgttagtg 172  Q
    |||| |||||||||||||||||||| ||| |||| || |||| | ||||| ||||||  |||||| ||| ||||||      ||  ||||||| ||||||    
T  32678937 ttagagtggtttttaaggggtttttgttccagccagtattttagcggcaatcgatttttccttgtattttttttttttttttcactcgagcttattagtg 32679036  T
Q  173 catcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    | |||||||||||||| |||||||||||  ||| ||||||| |||||    
T  32679037 cgtcttgcacgggcttgttggttaataaaatttagccgtttaaaaaa 32679083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 43397640 - 43397781
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttg------tgtttattttttccatccgagcttgttagtgcat 175  Q
    ||||||||||| | |||||||| ||||||| | |||||||||||||| ||||| || |||      | ||| |||||| || || ||||| ||||||| |    
T  43397640 gggtggttttttaagggtttttgttcgagcagttgttttgtggcaacagattttcctttgtatgtttttttttttttttcacccaagctt-ttagtgctt 43397738  T
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||| || ||||||||||| | ||||||| ||||||||    
T  43397739 cttgcacgggtttattggttaataa-tatttgccgattcaaaaa 43397781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 9e-39; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 76 - 212
Target Start/End: Original strand, 38908663 - 38908800
Alignment:
Q  76 gtgttagggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgttta-ttttttccatccgagcttgttagtgca 174  Q
    ||||| |||||||||||||||||||||| ||||| ||||||||||||||| |||||||| ||||||| |||| |||||| || |||||||| ||||||||    
T  38908663 gtgttggggtggtttttaaggggtttttgttcgaaccggtgttttgtggctaccgattttcccttgtatttattttttttcacccgagcttattagtgca 38908762  T
Q  175 tcttgcacgggcttcttggttaataattttttgccgtt 212  Q
    |||||||||| ||| |||||||||||| ||||||||||    
T  38908763 tcttgcacggccttattggttaataatattttgccgtt 38908800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 82 - 209
Target Start/End: Original strand, 41419617 - 41419748
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtt-ttgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 177  Q
    |||||||||||||||||||||| |||||| ||||||| || ||||||||||||||||||||| ||| ||||||   ||| |||||||| |||||||||||    
T  41419617 gggtggtttttaaggggtttttgttcgagtcggtgttattatggcaaccgatttccccttgtatttgtttttttttccacccgagcttattagtgcatct 41419716  T
Q  178 tgcacgggcttcttggttaataattttttgcc 209  Q
    ||||||||||| |||||||||||| |||||||    
T  41419717 tgcacgggcttgttggttaataatattttgcc 41419748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 14732473 - 14732334
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttcc-atccgagcttgttagtgcatcttg 179  Q
    |||||||||||||||||||||| ||||||| ||| |||| | || ||||||||||||||||| ||  |||||||| | |||||||| |||||||| || |    
T  14732473 gggtggtttttaaggggtttttgttcgagctggtatttttgcggtaaccgatttccccttgtattatttttttcccacccgagcttattagtgcacctcg 14732374  T
Q  180 cacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    ||||||||| |||||||||||| ||||||| |||||||||    
T  14732373 cacgggcttgttggttaataatattttgccttttcaaaaa 14732334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 82 - 200
Target Start/End: Complemental strand, 41378332 - 41378216
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttg 179  Q
    ||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||| |||    |||||||| |||||||| ||||||||||||     
T  41378332 gggtggtttttaaaggggtttttattcgagccggagtttgtgtggcaaccgatttcccctt-tgt---atttttccacccgagcttattagtgcatcttt 41378237  T
Q  180 cacgggcttcttggttaataa 200  Q
    ||||||||| |||||||||||    
T  41378236 cacgggcttgttggttaataa 41378216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 22649193 - 22649053
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttg--tggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgg 184  Q
    |||| |||||||||||  || ||||||||||| |  ||||||||||||||||||| | | | ||||| || | || ||||| ||||| | ||||||||||    
T  22649193 ttttaaaggggtttttgatcaagccggtgtttggaatggcaaccgatttccccttctttgtttttttctctacccaagcttattagtacttcttgcacgg 22649094  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| |||||||||||  |||||||| |||||||| |||||    
T  22649093 gcttgttggttaataaaattttgccgcttcaaaaaaaaaaa 22649053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 201
Target Start/End: Original strand, 43356750 - 43356803
Alignment:
Q  148 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataat 201  Q
    |||||| || |||| ||| |||||||||||||||||| ||| ||||||||||||    
T  43356750 tttttttcacccgaacttattagtgcatcttgcacggacttattggttaataat 43356803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 8e-36; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 40930961 - 40930818
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttatttttt-ccatccgagcttgttagtgcatcttgc 180  Q
    ||||||||||||||| |||||| ||||||||| ||||| ||| |||||||||||||||||| | |||||||| ||| |||||||| ||||||| ||||||    
T  40930961 gggtggtttttaaggagtttttgttcgagccgttgttt-gtgacaaccgatttccccttgtttgtatttttttccacccgagcttattagtgcttcttgc 40930863  T
Q  181 acgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||||||| |||||||||||| ||||||| ||||||||| |||||    
T  40930862 acgggcttgttggttaataatattttgccatttcaaaaaaaaaaa 40930818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 25829399 - 25829259
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatct 177  Q
    |||||||||||||||||||||||||| ||||||||||| |  || ||||||||||||||||| | ||||||||   ||| |||||||| ||||||| |||    
T  25829399 gggtggtttttaaggggtttttattcaagccggtgtttatagggaaaccgatttccccttgtttgtatttttttttccacccgagcttattagtgcttct 25829300  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    ||||||||||| ||||||||||| | ||||||| ||||||||    
T  25829299 tgcacgggcttgttggttaataa-tatttgccgattcaaaaa 25829259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 89 - 225
Target Start/End: Complemental strand, 13959347 - 13959207
Alignment:
Q  89 ttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcatcttgcacgg 184  Q
    ||||||||||||||| || |||||||||||| ||||||||||||||| || |||| | ||||||||   ||| |||||||| ||| ||| ||||||||||    
T  13959347 ttttaaggggtttttgtttgagccggtgtttatgtggcaaccgattttcctttgtttgtatttttttttccacccgagcttattattgcttcttgcacgg 13959248  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| |||| ||||||| ||||||||||||||||| |||||    
T  13959247 gcttgttggctaataatattttgccgtttcaaaaaaaaaaa 13959207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 82 - 221
Target Start/End: Complemental strand, 24200753 - 24200614
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 180  Q
    |||||||||||||| | ||||| |||||||||||||||| | |||||||||||||||||||| | | ||||||||| || ||||| ||||||| ||||||    
T  24200753 gggtggtttttaagtg-tttttgttcgagccggtgtttttgcggcaaccgatttccccttgtatgttttttttccacccaagcttattagtgcttcttgc 24200655  T
Q  181 acgggcttcttggttaataattttttgccgtttcaaaaata 221  Q
    |||| ||| ||| |||||||| |||||||| || |||||||    
T  24200654 acggacttgttgattaataatattttgccgattaaaaaata 24200614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 5200615 - 5200469
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgt-ttattttttccatccgagcttgttagtgcatcttg 179  Q
    ||||| |||||||||||||||| ||||||||||||||| || |||||||||||| ||||||| | || |||| |||| || | ||| ||||||  |||||    
T  5200615 gggtgatttttaaggggtttttgttcgagccggtgtttgtgcggcaaccgattttcccttgtatgtttttttctccacccaaacttattagtgtttcttg 5200516  T
Q  180 cacgggcttcttggttaataattttttgccgtttcaaaaataaaaag 226  Q
    ||||| ||| |||||||||||| |||||||| || ||||| ||||||    
T  5200515 cacggacttgttggttaataatattttgccgattaaaaaaaaaaaag 5200469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 22839250 - 22839391
Alignment:
Q  82 gggtggtttttaagggg-tttttattcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttt--tccatccgagcttgttagtgcatc 176  Q
    ||||||||||||| ||| ||||| ||||||||| |||||| |  |||||||||||||| ||| | | | |||||  ||||||||| ||| ||||||| ||    
T  22839250 gggtggtttttaaagggatttttgttcgagccgatgttttatatggcaaccgatttcctcttctttgtttttttcctccatccgaacttattagtgcgtc 22839349  T
Q  177 ttgcacgggcttcttggttaataattttttgccgtttcaaaa 218  Q
    |||||||||||| |||||||||||| |||||||| |||||||    
T  22839350 ttgcacgggcttgttggttaataatattttgccgattcaaaa 22839391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 38086551 - 38086402
Alignment:
Q  82 gggtggttttt--aaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt---ccatccgagcttgttagtgcat 175  Q
    |||||||||||  ||||||||||| |||||||| | |||| | ||||||||||||| ||||| | | ||||||||   ||| |||||||| ||||||| |    
T  38086551 gggtggttttttaaaggggtttttgttcgagccagagtttgtatggcaaccgattttcccttctttgtatttttttctccacccgagcttattagtgcgt 38086452  T
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||||||||| |||||||||||| |||||| | ||| |||| |||||    
T  38086451 cttgcacgggcttattggttaataatattttgctgattctaaaaaaaaaa 38086402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 10124866 - 10124935
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttcc 155  Q
    |||||||||||||||| ||||||||||||||||||  |||||||||||||||||||| | | ||||||||    
T  10124866 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttccccttgtttgttttttttcc 10124935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 7845135 - 7845184
Alignment:
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| |||||    
T  7845135 cttgcacgggcttgttggttaataatattttgccgtttcaaaaaaaaaaa 7845184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 30836272 - 30836116
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt-------ccatccgagcttgtta--- 169  Q
    ||||||||||||| ||||||||| ||||||||||| ||| || ||||| |||||||||||| | ||| ||||||       |||||||||||| |||       
T  30836272 gggtggtttttaaaggggtttttgttcgagccggtatttgtgcggcaatcgatttccccttctttttttttttttttttctccatccgagcttattaatt 30836173  T
Q  170 -gtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
     |||| ||| ||||| |||| |||||||||||| |||||||| |||||||| |||||    
T  30836172 agtgcttctcgcacgagcttgttggttaataatattttgccgattcaaaaaaaaaaa 30836116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 224
Target Start/End: Complemental strand, 44362994 - 44362918
Alignment:
Q  148 ttttttccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 224  Q
    |||||||||||||| ||| ||||||| |||||||| || || ||||||||||||  ||| |||||||||||| ||||    
T  44362994 ttttttccatccgaacttattagtgcttcttgcacaggattgttggttaataataattttccgtttcaaaaaaaaaa 44362918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 584187 - 584123
Alignment:
Q  161 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  584187 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 584123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 16572074 - 16572198
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgg 184  Q
    ||||||| ||| |||| ||||| |||||||||| | |||||||||||||||||||| ||||||||||  ||| |||||||| ||||||||||| ||||||    
T  16572074 tttttaaaggggttttgttcgaaccggtgtttttgcggcaaccgatttccccttgtatttattttttttccacccgagcttattagtgcatctcgcacgg 16572173  T
Q  185 gcttcttggttaataattttttgcc 209  Q
    |||| |||||||||||| |||||||    
T  16572174 gcttgttggttaataatattttgcc 16572198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 90 - 224
Target Start/End: Complemental strand, 47571694 - 47571560
Alignment:
Q  90 tttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacgggctt 188  Q
    |||||||||||||| || |||||||||||| ||||||||| |||| ||||||| ||||||||||  || |||||||| |||||||  ||| |||||| ||    
T  47571694 tttaaggggtttttgtttgagccggtgttt-gtggcaaccaattttcccttgtatttattttttttcacccgagcttattagtgctccttccacgggttt 47571596  T
Q  189 cttggttaataattttttgccgtttcaaaaataaaa 224  Q
     |||||||||||| |||||||| |||||||| ||||    
T  47571595 gttggttaataatattttgccgattcaaaaaaaaaa 47571560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 123 - 219
Target Start/End: Complemental strand, 15187072 - 15186975
Alignment:
Q  123 ggcaaccgatttccccttgtgtttattttt-tccatccgagcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||||||||||||| ||  ||||| |||| || ||||| |||||||||||||||||||||| |||||||||||| |||||||| ||||||||    
T  15187072 ggcaaccgatttccccttgtattcttttttatccacccaagcttattagtgcatcttgcacgggcttgttggttaataatattttgccgattcaaaaa 15186975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 82 - 225
Target Start/End: Original strand, 32183275 - 32183425
Alignment:
Q  82 gggtggttttt--aaggggtttttattcgagccggtgttt-tgtggcaaccgatttcccct--tgtgtttatttt-ttccatccgagcttgttagtgcat 175  Q
    |||||||||||  ||||||||||| ||||||||||||||| | ||||||||||||||||||  | ||||| |||| ||||| |||||||| |||||||      
T  32183275 gggtggttttttaaaggggtttttgttcgagccggtgtttgtatggcaaccgatttccccttctttgttttttttcttccacccgagcttattagtgcgc 32183374  T
Q  176 cttgcacgggctt-cttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||||||||||||  |||||||||||| |||||||| || ||||| |||||    
T  32183375 cttgcacgggcttgtttggttaataatattttgccgatttaaaaaaaaaaa 32183425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 85 - 219
Target Start/End: Complemental strand, 55133233 - 55133102
Alignment:
Q  85 tggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgcacg 183  Q
    |||||||||| |||||||| ||||||| | ||||| |||||||| | ||||||| |||| | | || ||| |||||||| || ||||||| |||||||||    
T  55133233 tggtttttaaagggtttttgttcgagctgatgtttgtgtggcaatcaatttccc-ttgtttgttttcttttcatccgagtttattagtgcttcttgcacg 55133135  T
Q  184 ggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||   |||||||||| ||||| |||||||||||    
T  55133134 ggctt---ggttaataatattttgtcgtttcaaaaa 55133102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 82 - 219
Target Start/End: Complemental strand, 25641407 - 25641263
Alignment:
Q  82 gggtggttttt--aaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgca 174  Q
    |||||||||||  || |||||||| ||||||||| ||||  | |||||||| |||||||||| | | ||||||||    ||| || ||||| |||||||     
T  25641407 gggtggttttttaaaagggtttttgttcgagccgatgttagtatggcaaccaatttccccttctttgtattttttttctccacccaagctttttagtgct 25641308  T
Q  175 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||||||| |||||||||||  |||||||| ||||||||    
T  25641307 tcttgcacgggcttgttggttaataacattttgccgattcaaaaa 25641263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 81 - 219
Target Start/End: Complemental strand, 16662441 - 16662301
Alignment:
Q  81 agggtggtttttaa-ggggtttttattcgagccggtgttttgt--ggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatct 177  Q
    |||||||||||||| ||||||||| | |||||| |||||||||  |||||| ||||| ||||| |   | ||||||||| |  ||||| ||||||| |||    
T  16662441 agggtggtttttaaaggggtttttgtacgagccagtgttttgtatggcaacagattttcccttcttagt-ttttttccaccttagcttattagtgcttct 16662343  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
     |||||||||| |||||||||||| |||||| | ||||||||    
T  16662342 cgcacgggcttgttggttaataatattttgctgattcaaaaa 16662301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 83 - 219
Target Start/End: Complemental strand, 42390906 - 42390766
Alignment:
Q  83 ggtggtttttaaggggtttttattcgagccggtgtttt-gtggcaaccgatttccccttgtgtttattttt---tccatccgagcttgttagtgcatctt 178  Q
    ||||||||||||||||||||| || ||||||||||||| | |||||||||||   |||| | ||| |||||   |||| |||||||| ||||| | ||||    
T  42390906 ggtggtttttaaggggtttttgtttgagccggtgttttagcggcaaccgattgttccttttatttgtttttttctccacccgagcttattagtacgtctt 42390807  T
Q  179 gcacgggcttcttggttaataattttttgccgtttcaaaaa 219  Q
    |||||||||| ||||  |||||  ||| |||| ||||||||    
T  42390806 gcacgggcttgttggaaaataaaatttagccgattcaaaaa 42390766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 225
Target Start/End: Complemental strand, 45511440 - 45511390
Alignment:
Q  175 tcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||||||||||||| |||||||||||| |||||| | |||||||| |||||    
T  45511440 tcttgcacgggcttgttggttaataatattttgctgattcaaaaaaaaaaa 45511390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 82 - 201
Target Start/End: Complemental strand, 23173107 - 23172985
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatctt 178  Q
    ||||||||||||||||| |||| ||||||||||||||| |  |||||| |||||| |||||| | ||||||||  ||| |||||||| ||||||| ||||    
T  23173107 gggtggtttttaagggggttttgttcgagccggtgtttatagggcaactgatttctccttgtttgtattttttttccacccgagcttattagtgcttctt 23173008  T
Q  179 gcacgggcttcttggttaataat 201  Q
    |||||||||| ||||||||||||    
T  23173007 gcacgggcttgttggttaataat 23172985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 207
Target Start/End: Original strand, 22887211 - 22887337
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttcc-atccgagcttgttagtgcatcttgc 180  Q
    |||||||||||||||||||||| || || || || |||||||||||| ||||| ||||| | ||| |||| ||| | |||||||| ||||||||||| ||    
T  22887211 gggtggtttttaaggggtttttgtttgaacctgtcttttgtggcaactgattttcccttatattttttttctcccacccgagcttattagtgcatctcgc 22887310  T
Q  181 acgggcttcttggttaataattttttg 207  Q
    |||||||| |||||||||||| |||||    
T  22887311 acgggcttgttggttaataatattttg 22887337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 82 - 225
Target Start/End: Complemental strand, 9931935 - 9931785
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt-------ccatccgagcttgttagtgc 173  Q
    ||||||||||| ||| |||||| ||||||| ||||||| || ||||||||||||||||| || | ||||||||       ||| || |||||||||||||    
T  9931935 gggtggtttttgaggtgtttttgttcgagctggtgtttgtgcggcaaccgatttcccctcgtttgtatttttttttcttcccacccaagcttgttagtgc 9931836  T
Q  174 atcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
     |||||||||||||| ||||||||||| | ||| |||||||||||| |||||    
T  9931835 ttcttgcacgggcttgttggttaataa-tatttaccgtttcaaaaaaaaaaa 9931785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 73 - 207
Target Start/End: Original strand, 25539810 - 25539947
Alignment:
Q  73 ttagtgttagggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgtt 168  Q
    ||||| || |||||||||||||||||||||| ||||||||| |||||  ||||||||||||||| ||||| ||    | |||||| || |||||||| ||    
T  25539810 ttagttttggggtggtttttaaggggtttttgttcgagccgatgtttgatggcaaccgatttcctcttgtatttttgtttttttttcacccgagcttatt 25539909  T
Q  169 agtgcatcttgcacgggcttcttggttaataattttttg 207  Q
    | ||| |||||||||||||| |||| ||||||| |||||    
T  25539910 aatgcttcttgcacgggcttgttgg-taataatattttg 25539947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 10431063 - 10431204
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgt--gtttattttt-tccatccgagcttgttagtgcatcttgcacg 183  Q
    |||||| | ||||||| |||||| |||||||| |||||||||||||||| ||||||  |||| ||||| |||| |||| ||| ||| ||| |||||||||    
T  10431063 tttttatgaggtttttgttcgagtcggtgtttgtgtggcaaccgatttctccttgtttgtttttttttctccacccgaacttattaatgcttcttgcacg 10431162  T
Q  184 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    || || ||| |||||||| |||| |||||||||||| |||||    
T  10431163 ggtttgttgattaataatatttttccgtttcaaaaaaaaaaa 10431204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 88 - 208
Target Start/End: Complemental strand, 819254 - 819134
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtt-tattttttccatccgagcttgttagtgcatcttgcacgggc 186  Q
    |||||||||||||||| ||||||  ||||||| ||||||||||||||||| |||| || | ||||||||| |||| ||| ||||||| |||| ||||| |    
T  819254 tttttaaggggtttttgttcgagttggtgttt-gtggcaaccgatttccctttgttttattttttttccacccgaacttattagtgcttcttacacggac 819156  T
Q  187 ttcttggttaataattttttgc 208  Q
    || |||| ||||||| ||||||    
T  819155 ttattgggtaataatattttgc 819134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 224
Target Start/End: Complemental strand, 3677924 - 3677779
Alignment:
Q  82 gggtggtttttaaggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtt----tattttttccatccgagcttgttagtgcatct 177  Q
    |||||||||||||||||||||| || ||||| |||| ||| |||||||||||  ||||||| ||    | ||||||||| |||||||| |||||||||||    
T  3677924 gggtggtttttaaggggtttttgtttgagccagtgtattgcggcaaccgattgtcccttgtattcttgttttttttccacccgagcttattagtgcatct 3677825  T
Q  178 tgcacgggcttcttggttaataattttttgccgtttcaaaaataaaa 224  Q
     ||| |||||| |||| ||||||| | |||| | |||||||| ||||    
T  3677824 cgcatgggcttgttgg-taataatatattgctgattcaaaaaaaaaa 3677779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 97 - 225
Target Start/End: Complemental strand, 42241708 - 42241577
Alignment:
Q  97 ggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttcc--atccgagcttgttagtgcatcttgcacgggcttcttgg 193  Q
    ||||||| ||| |||||| |||| | |||| |||||||||||||| | | |||||||| |  |||||||||| |||||||||||||| ||| ||| ||||    
T  42241708 ggtttttgttcaagccggagtttgtatggcgaccgatttccccttctttgtatttttttctcatccgagcttattagtgcatcttgcccggacttattgg 42241609  T
Q  194 ttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||||||| |||||||| || ||||| |||||    
T  42241608 ttaataatattttgccgattaaaaaaaaaaaa 42241577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 2292168 - 2292222
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttttgt--ggcaaccgatttcccctt 140  Q
    |||||||||||||||| ||||||||||||||||||  ||||||||||||||||||    
T  2292168 tttttaaggggtttttgttcgagccggtgttttgttaggcaaccgatttcccctt 2292222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 9597800 - 9597742
Alignment:
Q  167 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||||| |||||||| ||||| |||||||||||| |||||||| |||||||| |||||    
T  9597800 ttagtgcttcttgcacaggcttgttggttaataatattttgccgattcaaaaaaaaaaa 9597742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 225
Target Start/End: Complemental strand, 33112844 - 33112703
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg--tgtttattttttccatccga-gcttgttagtgcatcttgcacg 183  Q
    |||||||||||||||| ||||||||   |||| | ||||||||||||||||||||  ||||| ||||||||  || | |||| ||||||| |||||||||    
T  33112844 tttttaaggggtttttgttcgagccaaagtttgtatggcaaccgatttccccttgcttgttttttttttcccccccaagctttttagtgcgtcttgcacg 33112745  T
Q  184 ggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||| |||||||||||| |||||||| |||||||| |||||    
T  33112744 ggcttgttggttaataatattttgccgattcaaaaaaaaaaa 33112703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 10246910 - 10247049
Alignment:
Q  82 gggtggtttttaa-ggggtttttattcgagccggtgttttgtggcaaccgatttccccttgtgtttattttttccatccgagcttgttagtgcatcttgc 180  Q
    ||||||||||||| ||||||||| |||||||||||||| |||| |||||||||| ||||| | | | |||| |||| | || | | ||||||| ||||||    
T  10246910 gggtggtttttaaaggggtttttgttcgagccggtgttgtgtgacaaccgattttcccttctttgttttttctccacctgaaccttttagtgcttcttgc 10247009  T
Q  181 acgggcttcttggttaataat-tttttgccgtttcaaaaa 219  Q
    |||||||| |||||||||||| ||||||||| || |||||    
T  10247010 acgggcttgttggttaataatatttttgccgattaaaaaa 10247049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 226
Target Start/End: Original strand, 11546772 - 11546912
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttattttttc-catccgagcttgttagtgcatcttgcacggg 185  Q
    ||||||||| |||||| ||||||||||||||| | || ||||||||||| |||| | | | ||||||| || |||||||| |||||||  ||||||||||    
T  11546772 tttttaaggagtttttgttcgagccggtgtttgtatgacaaccgatttctccttctttgttttttttctcacccgagcttattagtgctacttgcacggg 11546871  T
Q  186 cttcttggttaataattttttgccgtttcaaaaataaaaag 226  Q
    ||| |  ||||||||| ||||||||||| ||||| ||||||    
T  11546872 cttgtcagttaataatattttgccgtttaaaaaaaaaaaag 11546912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 81 - 216
Target Start/End: Original strand, 6575720 - 6575860
Alignment:
Q  81 agggtggtttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt----ccatccgagcttgttagtgcat 175  Q
    ||||||||||||||| ||||||| ||||||||| ||||| | || |||| ||||| || |||||| ||||||||    ||| |||| ||| ||||||| |    
T  6575720 agggtggtttttaagaggtttttgttcgagccgatgtttgtatgacaactgattttcctttgtgtgtatttttttcttccacccgaacttattagtgctt 6575819  T
Q  176 cttgcacgggcttcttggttaataattttttgccgtttcaa 216  Q
    ||||||||||||| ||| |||||||| |||||||| |||||    
T  6575820 cttgcacgggcttgttgattaataatattttgccgattcaa 6575860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 224
Target Start/End: Original strand, 15859093 - 15859244
Alignment:
Q  82 gggtggttttt--aaggggtttttattcgagccggtgttt-tgtggcaaccgatttcccc----ttgtgtttattttttccatccgagcttgttagtgca 174  Q
    |||||||||||  ||||||||||| ||||||||||||||| | |||||||||||||||||    |||| ||| |||| |||| |||||||| |||||||     
T  15859093 gggtggttttttaaaggggtttttgttcgagccggtgtttgtttggcaaccgatttccccttctttgttttttttttctccacccgagcttattagtgcg 15859192  T
Q  175 tcttgcacgggct--tcttggttaataattttttgccgtttcaaaaataaaa 224  Q
     ||||||||||||  | ||| |||||||| |||||||| ||| |||| ||||    
T  15859193 ccttgcacgggcttgttttgattaataatattttgccgattctaaaaaaaaa 15859244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 225
Target Start/End: Original strand, 34761167 - 34761306
Alignment:
Q  88 tttttaaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttgtgtttatttttt--ccatccgagcttgttagtgcatcttgcacgg 184  Q
    ||||||||| |||||| |||||| |||||||| | || |||||||||||  ||| | | ||||||||  ||| |||||||| |||||||  |||||||||    
T  34761167 tttttaaggagtttttgttcgagtcggtgtttgtatgacaaccgatttcttcttctttgtatttttttcccacccgagcttattagtgctacttgcacgg 34761266  T
Q  185 gcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    |||| | | ||||||| | |||||||||||||||| |||||    
T  34761267 gcttgtcgtttaataa-tatttgccgtttcaaaaaaaaaaa 34761306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 167 - 210
Target Start/End: Complemental strand, 12754465 - 12754422
Alignment:
Q  167 ttagtgcatcttgcacgggcttcttggttaataattttttgccg 210  Q
    ||||||| ||||||||||| || |||||||||||||||||||||    
T  12754465 ttagtgcgtcttgcacgggtttgttggttaataattttttgccg 12754422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 141
Target Start/End: Original strand, 33984753 - 33984814
Alignment:
Q  82 gggtggttttt-aaggggtttttattcgagccggtgttt-tgtggcaaccgatttccccttg 141  Q
    ||||||||||| ||||||||||| ||||| || |||||| | ||||||||||||||||||||    
T  33984753 gggtggtttttgaaggggtttttgttcgaaccagtgtttgtatggcaaccgatttccccttg 33984814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 12947 - 12883
Alignment:
Q  161 agcttgttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaaaa 225  Q
    ||||| ||||||| ||||| |||||||| |||| ||||||| |||||||||||||| || |||||    
T  12947 agcttattagtgcttcttgtacgggcttgttggctaataatattttgccgtttcaacaaaaaaaa 12883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 7956 - 8012
Alignment:
Q  167 ttagtgcatcttgcacgggcttcttggttaataattttttgccgtttcaaaaataaa 223  Q
    ||||||||| |||||  ||||| |||||||||||| |||||||| || |||||||||    
T  7956 ttagtgcattttgcataggcttgttggttaataatattttgccgatttaaaaataaa 8012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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