View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_71 (Length: 252)
Name: NF5814_high_71
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_71 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26725169 - 26725408
Alignment:
| Q |
1 |
aaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcacatgttatttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
26725169 |
aaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaacttagcaaaagagaaagatgaaaagcatcacatgttatttgc |
26725268 |
T |
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| Q |
101 |
tactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaagaaagccaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
26725269 |
tactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagagaaagccaaaga |
26725368 |
T |
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| Q |
201 |
tgatgcactcaaagactggaaattttcaacttctgcttca |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26725369 |
tgatgcactcaaagactggaaattttcaacttctgcttca |
26725408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 26733483 - 26733722
Alignment:
| Q |
1 |
aaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaagcatcacatgttatttgc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
26733483 |
aaaagagaaattaaatacacccaatgcaaacattgcaaaccaattcataggtacaaaactgagcaaaagagaaagatgaaaaacatcacatgttatttgc |
26733582 |
T |
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| Q |
101 |
tactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctnnnnnnntcaatgaaaggaaagaaagccaaaga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
26733583 |
tactattgtgcatgttatttacaacgtgttattcattaaataatgatcttgatgcgttgctaaagctaaaaaaatcaatgaaaggagagaaagccaaaga |
26733682 |
T |
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| Q |
201 |
tgatgcactcaaagactggaaattttcaacttctgcttca |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
26733683 |
tgatgcactcaaagactggaaattttcaacttctgcttca |
26733722 |
T |
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