View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_78 (Length: 249)
Name: NF5814_high_78
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_78 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 79 - 239
Target Start/End: Complemental strand, 223721 - 223564
Alignment:
| Q |
79 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattattatttgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
178 |
Q |
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| T |
223721 |
ttagaatgtgaagtaacctttgaaactcatttcactttattattatt---tgcacaagtgaacaaacaatgcaggctcgccggagaagctctgtccggcc |
223625 |
T |
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| Q |
179 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
239 |
Q |
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| T |
223624 |
accggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
223564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 147 - 239
Target Start/End: Complemental strand, 218448 - 218356
Alignment:
| Q |
147 |
atgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
239 |
Q |
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| T |
218448 |
atgcaggctcgccggagaagctctgtccggccaccggtggcggagaaggattctaaacattttatgaaagccatccttccctcagccattcat |
218356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 199291 - 199215
Alignment:
| Q |
144 |
acaatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaagattctaaacattttatgaaagccat |
220 |
Q |
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| T |
199291 |
acaatgcagcctcaccggagaagatgtggccggtcaccggcgccggagaaagcatcgaagcattttatgaaagccat |
199215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 226
Target Start/End: Complemental strand, 212354 - 212309
Alignment:
| Q |
181 |
cggcgccggagaaagattctaaacattttatgaaagccatccttcc |
226 |
Q |
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| T |
212354 |
cggcggcggagaaagattcaaagcattttatgaaagccatacttcc |
212309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 184 - 239
Target Start/End: Complemental strand, 29839364 - 29839309
Alignment:
| Q |
184 |
cgccggagaaagattctaaacattttatgaaagccatccttccctcacccattcat |
239 |
Q |
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| T |
29839364 |
cgccggagaaggaatcaaaacattttatgaaagccatacttccctcacccattcat |
29839309 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 145 - 239
Target Start/End: Complemental strand, 3809431 - 3809336
Alignment:
| Q |
145 |
caatgcaggctcgccggagaagctctgtccggccaccggcgccggagaaag-attctaaacattttatgaaagccatccttccctcacccattcat |
239 |
Q |
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| T |
3809431 |
caatgcagcctcgccggagaaggtctgtccagtcattggcgccggagaaggtaatcaaaacattttctgaaagccataattccctcacccattcat |
3809336 |
T |
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