View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_8 (Length: 549)
Name: NF5814_high_8
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 126 - 486
Target Start/End: Original strand, 43758210 - 43758570
Alignment:
| Q |
126 |
gaagagcttaattcaactgagaaaatcaaacatgggagctagtcaatctaccagttgagaagaaagcgataagtgtgaagtggatgtgtaaagtgaagca |
225 |
Q |
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| T |
43758210 |
gaagagcttaattcaattgagaaaatcaaacatgggagctagtcaatctaccagttgagaagaaagcgataagtgtgaagtggatgtgtaaagtgaagca |
43758309 |
T |
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| Q |
226 |
gaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcaggaatatattttggtgaagattttgcgcctgtt |
325 |
Q |
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| T |
43758310 |
gaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcagggatatattttggtgaagattttgcgcctgtt |
43758409 |
T |
|
| Q |
326 |
tctagaattgaaactataagaatggcagtaactattacaagtttggaacaatgccacatatttcaaatggacgtaaaataaacattcttgaatggaccta |
425 |
Q |
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| T |
43758410 |
tctagaattaaaactataacaattgcagtaactattacaagtttggaacaatgccacatattttaaatggacgtaaaataaacattcttgaatggaccta |
43758509 |
T |
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| Q |
426 |
tttatgaggaggtatataatgactaaccaccaagatttgagttgaaatgtagtaaatgaat |
486 |
Q |
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| T |
43758510 |
tttatgaggaggtatataatgactaaccaccaagatttgagttgaaaagtagtaaatgaat |
43758570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 43 - 117
Target Start/End: Original strand, 43757606 - 43757680
Alignment:
| Q |
43 |
aatatctcctaaattgatccaattgaatgagtgtgagatcaatcgaagcttgcatatgaagatgaagacacaaaa |
117 |
Q |
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| T |
43757606 |
aataactcctaaattgatccaattgaatgagtgtgagatcaatcgaagcttgcatatgaagatgaagacacaaaa |
43757680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 43757461 - 43757511
Alignment:
| Q |
29 |
ctaagagtttctttaa----tatctcctaaattgatccaattgaatgagtg |
75 |
Q |
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| T |
43757461 |
ctaagagtttctttaagttttatctcctaaattgatccaattgagtgagtg |
43757511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 210 - 293
Target Start/End: Complemental strand, 32656496 - 32656413
Alignment:
| Q |
210 |
tgtgtaaagtgaagcagaattcaagtggaggagtgaccaaatacaaggctagacttaaatctagaggattcttgcagagagcag |
293 |
Q |
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| T |
32656496 |
tgtgtaaagtaaagcagaatccaagtggaggagtgaccaaatacaagactagacttaaatctagaggattcttgcagagagcag |
32656413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 418
Target Start/End: Complemental strand, 32656385 - 32656307
Alignment:
| Q |
340 |
tataagaatggcagtaactattacaagtttggaacaatgccacatatttcaaatggacgtaaaataaacattcttgaat |
418 |
Q |
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| T |
32656385 |
tataagattggcagtaactattacaagcttggaacaatgccacatatatcaaatggacgtaaaataaacattcttgaat |
32656307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 32656555 - 32656506
Alignment:
| Q |
126 |
gaagagcttaattcaactgagaaaatcaaacatgggagctagtcaatcta |
175 |
Q |
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| T |
32656555 |
gaagagcttaattcaattgagaaaatcatacatgggagctagttaatcta |
32656506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 329 - 427
Target Start/End: Original strand, 37647959 - 37648057
Alignment:
| Q |
329 |
agaattgaaactataagaatggcagtaactattacaagtttggaacaatgccacatatttcaaatggacgtaaaataaacattcttgaatggacctatt |
427 |
Q |
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| T |
37647959 |
agaatcgaaactataaggatggcaattgctattacaagtttgaaacagtggcacgtatatcaaattgaagtgaaatcaacattcttgaatggaactatt |
37648057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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