View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_80 (Length: 248)
Name: NF5814_high_80
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_80 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 46912541 - 46912768
Alignment:
| Q |
1 |
atatcccaatataaatgtactaggacaccaaacttttcttgtagtaaacatttatatcaattggcaactaagatttggtgaaaaatcgcttaatcatagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
46912541 |
atatcccaatataaatgtactaggacaccaaacttttcttgtagtaaacatttatatcaattggcatctaagatttggtgaaaaatcgcttaatcatagc |
46912640 |
T |
|
| Q |
101 |
taaatacctataattatatatgttttaagggacctataactatatattggtagtggccttttgaatgtattaataaattaattcctcaacatatatatcg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46912641 |
taaatacctataattatatatgttttaagggacctataactatatattggtagtggccttttgaatgtattaataaattaattcctcaacatatatatcg |
46912740 |
T |
|
| Q |
201 |
ctctcaatttattaattacaaatatatt |
228 |
Q |
| |
|
||||||||||||| |||||||||||| |
|
|
| T |
46912741 |
ctctcaatttattttctacaaatatatt |
46912768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University