View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_82 (Length: 247)
Name: NF5814_high_82
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_82 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 2341562 - 2341323
Alignment:
| Q |
1 |
catttttacttagagaagatcaacccataaaaggtgacagttaaatcccacgtcttgcttaattaactatgaactttgaggtaacaaaccattaaatccc |
100 |
Q |
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| T |
2341562 |
catttttacttagagaagatcaacccataaaaggtgacagttaaatcccac--cttgcttaattaactatgaactttgaggtaacaaaccattaaatccc |
2341465 |
T |
|
| Q |
101 |
accttgtttaattaaaaggagtacaggttatttgtacgctataagttgatagggttagcattcttttgaatcccggagccatgtagtgagcacaaagcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2341464 |
accttgtttaattaaaaggagtacaggttatttgtacgctataagttgatagggttagcattcttttgaatcccggagccatgtagtgagcacaaagcga |
2341365 |
T |
|
| Q |
201 |
actattctttcgccttttacaaaagaaaaatcaatattcttc |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
2341364 |
actattctttcgccttttacaaaagaaaaatcaatattcttc |
2341323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Original strand, 5900542 - 5900580
Alignment:
| Q |
189 |
agcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||| |
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| T |
5900542 |
agcacaaagcgaactattctttcgccttttactaaagaa |
5900580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 43633492 - 43633452
Alignment:
| Q |
187 |
tgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
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| T |
43633492 |
tgagcacaaagtgaactattctttcgccttttactaaagaa |
43633452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 227
Target Start/End: Original strand, 36790850 - 36790890
Alignment:
| Q |
187 |
tgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |||||| |
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| T |
36790850 |
tgagcacaaagcgaactattctttcgccttttactaaagaa |
36790890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 227
Target Start/End: Complemental strand, 49588241 - 49588203
Alignment:
| Q |
189 |
agcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||| |
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| T |
49588241 |
agcacaaagcgaactattctttcgccttttactaaagaa |
49588203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 17889424 - 17889477
Alignment:
| Q |
174 |
cggagccatgtagtgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
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||||||| ||| |||||||| ||| ||||||||||||||||||||| |||||| |
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|
| T |
17889424 |
cggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaa |
17889477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 21884163 - 21884105
Alignment:
| Q |
169 |
aatcccggagccatgtagtgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
|
|||| ||||||| ||| |||||||| ||| ||||||||||||||||||||| |||||| |
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|
| T |
21884163 |
aatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaa |
21884105 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 43014433 - 43014375
Alignment:
| Q |
169 |
aatcccggagccatgtagtgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
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|||| ||||||| ||| |||||||| ||| ||||||||||||||||||||| |||||| |
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| T |
43014433 |
aatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaa |
43014375 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 187 - 227
Target Start/End: Complemental strand, 3467711 - 3467671
Alignment:
| Q |
187 |
tgagcacaaagccaactattctttcgccttttacaaaagaa |
227 |
Q |
| |
|
||||| |||||| ||||||||||||||||||||| |||||| |
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|
| T |
3467711 |
tgagctcaaagcaaactattctttcgccttttactaaagaa |
3467671 |
T |
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