View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_high_86 (Length: 245)
Name: NF5814_high_86
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_86 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 621140 - 621012
Alignment:
| Q |
99 |
agaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
621140 |
agaaaagcataatcatgatgatggtgataacaacaaagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc |
621041 |
T |
|
| Q |
199 |
cattcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
621040 |
cattcatttagaatagaagctaagaactc |
621012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 217
Target Start/End: Original strand, 28590398 - 28590440
Alignment:
| Q |
175 |
catatgtatgtctttctttgtacccattcatttagaatagaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28590398 |
catatgtatgtctttctttgtacccattcatttagaatagaag |
28590440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 227
Target Start/End: Original strand, 1577016 - 1577144
Alignment:
| Q |
99 |
agaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1577016 |
agaaaagcataatcatgatgatggtgataacaacaaagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtacc |
1577115 |
T |
|
| Q |
199 |
cattcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1577116 |
cattcatttagaatagaagctaagaactc |
1577144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 53421230 - 53421367
Alignment:
| Q |
93 |
accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgta----tgtctt |
188 |
Q |
| |
|
||||||| ||||||||||||| ||||||| |||| ||||||||| || |||||||||||||||||||||||||| || |||||||||||| | |||| |
|
|
| T |
53421230 |
accaccaaaaaagcataatcacgatgatgttgatgacaacaaaataataaccttcatcccaaaattgcaggaaggagcaggacatatgtatatctttctt |
53421329 |
T |
|
| Q |
189 |
tctttgtacccattcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
|||||||||||||| | || ||||||||||||| ||||| |
|
|
| T |
53421330 |
tctttgtacccatt-agtttgaatagaagctaaaaactc |
53421367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 93 - 227
Target Start/End: Original strand, 9082636 - 9082770
Alignment:
| Q |
93 |
accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt |
192 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9082636 |
accaccagaaaagcataatcatgatgatggtgataacaacatagcaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt |
9082735 |
T |
|
| Q |
193 |
tgtacccattcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||| |
|
|
| T |
9082736 |
tgtacccgttcatttaaaatagaagctaagaactc |
9082770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 8570750 - 8570617
Alignment:
| Q |
93 |
accaccagaaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctt |
192 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||||||||| || |||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
8570750 |
accaccataaaagcataatcacgatgatggtgataacaacaaaataataaccttcatcccaaaattgcaggaaggagcaggacatatgtatgtctttctt |
8570651 |
T |
|
| Q |
193 |
tgtacccattcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
|||||||||| | || ||||||||||||||||||| |
|
|
| T |
8570650 |
tgtacccatt-agtttgaatagaagctaagaactc |
8570617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 23092297 - 23092422
Alignment:
| Q |
101 |
aaaagcataatcatgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaagtaggaggacatatgtatgtctttctttgtaccca |
200 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||||||||| || ||||||||||||| |||||||||||||||| |
|
|
| T |
23092297 |
aaaagcataatcacgatgatggtgataacaacaaagtaataaccttcatcccaaaattgcaggaaggagcaggacatatgtatatctttctttgtaccca |
23092396 |
T |
|
| Q |
201 |
ttcatttagaatagaagctaagaactc |
227 |
Q |
| |
|
|| | || ||||||||||||||||||| |
|
|
| T |
23092397 |
tt-agtttgaatagaagctaagaactc |
23092422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 41501274 - 41501221
Alignment:
| Q |
113 |
atgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaag |
166 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
41501274 |
atgatggtggtgataagaacaaagcaacaaccatcatcccaaaattgcaggaag |
41501221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 166
Target Start/End: Complemental strand, 41511441 - 41511388
Alignment:
| Q |
113 |
atgatgatggtgataacaacaaaacaacaaccttcatcccaaaattgcaggaag |
166 |
Q |
| |
|
|||||| ||||||||| |||||| ||||| | ||||||||||||||||||||| |
|
|
| T |
41511441 |
atgatggtggtgataagaacaaagcaacagctatcatcccaaaattgcaggaag |
41511388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 217
Target Start/End: Complemental strand, 46201765 - 46201723
Alignment:
| Q |
175 |
catatgtatgtctttctttgtacccattcatttagaatagaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
46201765 |
catatgtatgtctttctttgtacccattcgtttagaatagaag |
46201723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University