View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_9 (Length: 537)
Name: NF5814_high_9
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_9 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 511; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 511; E-Value: 0
Query Start/End: Original strand, 12 - 537
Target Start/End: Original strand, 53491601 - 53492129
Alignment:
| Q |
12 |
catcatcatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaa |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491601 |
catcaccatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaa |
53491700 |
T |
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| Q |
112 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491701 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
53491800 |
T |
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| Q |
212 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcatt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491801 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaacaggaggaaaggcctcaaatactcatt |
53491900 |
T |
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| Q |
312 |
acagatgccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtga |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53491901 |
acagatgccaaagatgcatatattaaggcagattcctaaaataactacttgacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtga |
53492000 |
T |
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| Q |
409 |
ccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatg |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53492001 |
ccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaagtagatgtgcatg |
53492100 |
T |
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| Q |
509 |
ataaaaacaatatccaagactaattcacc |
537 |
Q |
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| T |
53492101 |
ataaaaacaatatccaagactaattcacc |
53492129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 53499194 - 53499468
Alignment:
| Q |
12 |
catcatcatcgctccaatctgttaaaaaagcggacaaaaatataaatgcaatcgtacataagaggaatccttccattcatgtatactctagacattaaaa |
111 |
Q |
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||||| ||| |||||||||||||||| |||||||| ||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||| |
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| T |
53499194 |
catcaccattgctccaatctgttaaataagcggactaaaatataaatgcaatcgtacataaaaggagttcttccattcatgtatactctagacattaaaa |
53499293 |
T |
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| Q |
112 |
gcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaacttt |
211 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53499294 |
gcttacagttcgagtagaatagccccatgagttctgccaaaccattgctttctctcccttcttatcttcaaattttacctcgaacttttcagcaaacttt |
53499393 |
T |
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| Q |
212 |
tgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
286 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53499394 |
tgtcccaagcaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaactgaaca |
53499468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 300 - 495
Target Start/End: Original strand, 53499888 - 53500085
Alignment:
| Q |
300 |
caaatactcattacagatgccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgca |
396 |
Q |
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|||| ||||||||||||||||||| ||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
53499888 |
caaagactcattacagatgccaaaaatgcatatagtaaggcagattcctaaaataactacttgatggaatacctctgcatgtgcttcatcctctgttgca |
53499987 |
T |
|
| Q |
397 |
aaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaacaagttccaatataaa |
495 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||| ||||||||| |
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| T |
53499988 |
aaagcaccgtgaccttcttgccaaagaaactcacgactcctgcaatcaaaatttgtataagcaccc-aaaatgggactatgaacaagtttcaatataaa |
53500085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 100 - 286
Target Start/End: Original strand, 16070390 - 16070576
Alignment:
| Q |
100 |
tagacattaaaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttt |
199 |
Q |
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|||||||| |||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||| ||||| |||||||||| |||| ||| ||||| |
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| T |
16070390 |
tagacattgaaagcttacagttcgagtagaaaacccccatgagttctgccaaaccattgttttctctaccttcttatcttcaaagtttatctcaaacttc |
16070489 |
T |
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| Q |
200 |
tcagcaaacttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaaaattgaaca |
286 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||||| |||| ||||||||||||| |||||| ||||||||||| |
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| T |
16070490 |
tcagcaaacttttgtcccaaacaatgggtagctgcaccttgtatcccacgaccaatgtttggaataaaagcctagaaaaattgaaca |
16070576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 318 - 521
Target Start/End: Original strand, 16071131 - 16071337
Alignment:
| Q |
318 |
gccaaagatgcatatattaaggcagattcctaaaataacta---gacggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttct |
414 |
Q |
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|||||| ||||| ||||||||||| |||||||||| ||||| || ||||||||||||||| |||||| ||||| | |||||||||||||| |||||| |
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| T |
16071131 |
gccaaatatgcaaatattaaggcaaattcctaaaacaactacttgatggaatacctctgcatctgcttcttcctcagaagcaaaagcactgtgtccttct |
16071230 |
T |
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| Q |
415 |
tgccaaaggaactcacgactcctgcaatcaaaatttgaataagcaccctaaaatgggactataaa--caagttccaatataaagtagatgtgcatgataa |
512 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||| | | |||||| |||||| | ||||||| |||| ||||||||||||| |||||| |
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| T |
16071231 |
tgccaaagaaactcacgactcctgcaatcaaaatttgtctaa-ctgcttaaaat-atactatatatgcaagttctaatacaaagtagatgtgcgtgataa |
16071328 |
T |
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| Q |
513 |
aaacaatat |
521 |
Q |
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||||||||| |
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| T |
16071329 |
aaacaatat |
16071337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 3e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 109 - 277
Target Start/End: Complemental strand, 45355076 - 45354908
Alignment:
| Q |
109 |
aaagcttacagttcgagtagaatagccccatgaattctgccaaaccattgctttctctcccttcatatcttcaaattttacctcgaacttttcagcaaac |
208 |
Q |
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||||||||||||||||||| |||| |||| || |||||||| ||||||||||||||||||||| || |||| | |||| ||| ||| ||| |||||| |
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| T |
45355076 |
aaagcttacagttcgagtactataggcccacgagttctgccagaccattgctttctctcccttctcattttcatagtttatctcaaacattttagcaaaa |
45354977 |
T |
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| Q |
209 |
ttttgtctcaaacaatgggtagttgcaccttgtatcccacaaccagtgtttggaataaatgcctaggaa |
277 |
Q |
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||||||| ||||||||| | ||||||||||||||| |||| |||||||||||||||||||||||||||| |
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| T |
45354976 |
ttttgtcccaaacaatgagaagttgcaccttgtataccacgaccagtgtttggaataaatgcctaggaa |
45354908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 362 - 518
Target Start/End: Complemental strand, 45354343 - 45354189
Alignment:
| Q |
362 |
ggaatacctctgcatgtgcttcatcctctgttgcaaaagcactgtgaccttcttgccaaaggaactcacgactcctgcaatcaaaatttgaataagcacc |
461 |
Q |
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|||||||||||| || |||||| |||| ||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||| | ||||| ||| |
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| T |
45354343 |
ggaatacctctgtatctgcttcctcctttgttgcaaaagcagtgtgtccttcttgccaaagaaactcacgactcctgcaattaaaattggtataagtacc |
45354244 |
T |
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| Q |
462 |
ctaaaatgggactataaacaagttccaatataaagtagatgtgcatgataaaaacaa |
518 |
Q |
| |
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|| |||| |||||||| | |||| || ||| ||||| |||| |||||||||||||| |
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| T |
45354243 |
ctgaaat-ggactatacaaaagtgcc-atacgaagtaaatgtacatgataaaaacaa |
45354189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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