View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_90 (Length: 243)
Name: NF5814_high_90
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_90 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 11242373 - 11242157
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
11242373 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaacatacggt |
11242274 |
T |
|
| Q |
118 |
ctccggatcgtgcacttttcagcttccaagtgttaaaatattggacatggtcagcaaggaccgtgtgtttttccaactattcannnnnnnnnncttttct |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
11242273 |
ctccggatcgtgcacttttcagcttccaagtgttaaaatattggacatggtcagcaaggaccgtgtgtttttccagctattcattttttttttcttttct |
11242174 |
T |
|
| Q |
218 |
tcaatttctctgctcct |
234 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
11242173 |
tcaatttctctgctcct |
11242157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 200
Target Start/End: Original strand, 11269010 - 11269197
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggt |
117 |
Q |
| |
|
||||||| |||||||||| |||||||| ||| |||||| | |||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
11269010 |
aaaaccttaagacaatgccttaaactcatatt-acaagcataaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaacgcacggc |
11269108 |
T |
|
| Q |
118 |
ctccg-----gatcgtgcacttttcagcttccaagtgttaaaatattggacatgg-tcagcaaggaccgtgtgtttttccaactattca |
200 |
Q |
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|| | || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
11269109 |
ctgcatagcagaccatgcacttttcagcttccaagtgttaaaatactggacatggattagcaaggaccgtgtgtttttccagctattca |
11269197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 18 - 200
Target Start/End: Complemental strand, 11281191 - 11281004
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggt |
117 |
Q |
| |
|
||||||| || |||||||||||||||| ||| |||||||| |||||||||||||||||||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
11281191 |
aaaaccttaacacaatgcattaaactcatatt-acaagcttaaaaataggaaaaccaaagagttttgtaacagctctagctaacagcaaaaacgcacggc |
11281093 |
T |
|
| Q |
118 |
ct-----ccggatcgtgcacttttcagcttccaagtgttaaaatattggacatgg-tcagcaaggaccgtgtgtttttccaactattca |
200 |
Q |
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| | || | |||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||||| | ||||||| |
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| T |
11281092 |
ttgcataacagaccatgcacttttcagcttccaagtgttaaaatactggacatggattagcaaggaccgtgtgtttttctagctattca |
11281004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 9798678 - 9798816
Alignment:
| Q |
20 |
aacctcaagacaatgcattaaactcggatttacaagctttaaaatagga-aaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggtc |
118 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||| |
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|
| T |
9798678 |
aacctctagacaaggcattaaactcgaatttacaagctttaaaataggagaaaccaaagagttttgtaacagctctagctgacagcaaaaacgcacggtc |
9798777 |
T |
|
| Q |
119 |
t-ccggatcgtgcacttttcagcttccaagtgttaaaat |
156 |
Q |
| |
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| | | ||||||||||||| ||||||||||||||||| |
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| T |
9798778 |
tgcacaaccgtgcacttttcaacttccaagtgttaaaat |
9798816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 155
Target Start/End: Complemental strand, 15201823 - 15201683
Alignment:
| Q |
20 |
aacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggtct |
119 |
Q |
| |
|
||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||| | ||||| ||||||| |||||| | |
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|
| T |
15201823 |
aacctcaagacaagatattaaacttggatttacaaactttaaaataggaaaaccaaagagttttgtaacagctctagttgacaacaaaaacgcacggtat |
15201724 |
T |
|
| Q |
120 |
cc-----ggatcgtgcacttttcagcttccaagtgttaaaa |
155 |
Q |
| |
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| || ||||||||||||||||| |||||||||||| |
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|
| T |
15201723 |
gcacagtagaccgtgcacttttcagcttacaagtgttaaaa |
15201683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 23 - 119
Target Start/End: Complemental strand, 27318494 - 27318397
Alignment:
| Q |
23 |
ctcaagacaatgcattaaactcggatttacaagctttaaaatagg-aaaaccaaagagttttctaacagctcttgctgacagcaaaaacacacggtct |
119 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||| ||||||||||||||| |||||||| |
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| T |
27318494 |
ctcaagacaaggcattaaactcgaatttacaagctttaaaatagggaaaaccaaagagttttgtaacagctccagctgacagcaaaaacgcacggtct |
27318397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 16999377 - 16999468
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttttctaacagctcttgctgacagcaaaaa |
109 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||| ||||||||||||||| |
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|
| T |
16999377 |
aaaacctcaagacatgacattaaactcggatttacaagctttaaaataggaaaaccgaagagttttgtaacatctcctgctgacagcaaaaa |
16999468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 42687886 - 42687950
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaataggaaaaccaaagagttt |
82 |
Q |
| |
|
||||||||||||||| |||||||||| ||||| |||||||||||| ||||||||||||||||| |
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|
| T |
42687886 |
aaaacctcaagacaagacattaaactcatatttataagctttaaaatgggaaaaccaaagagttt |
42687950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 21276770 - 21276696
Alignment:
| Q |
18 |
aaaacctcaagacaatgcattaaactcggatttacaagctttaaaata-ggaaaaccaaagagttttctaacagc |
91 |
Q |
| |
|
|||| |||||||||| |||||||| || | |||||| ||||||| || |||||||||||||||||| ||||||| |
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|
| T |
21276770 |
aaaatctcaagacaagacattaaacacgaaattacaaactttaaattaaggaaaaccaaagagttttgtaacagc |
21276696 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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