View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_96 (Length: 239)
Name: NF5814_high_96
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_96 |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 9082389 - 9082609
Alignment:
| Q |
4 |
atcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttg |
103 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
9082389 |
atcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaattaaggttgaatgatgaagattgggtttg |
9082488 |
T |
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| Q |
104 |
tnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaaagattctgaatccaacacatttcaaaaatagg |
203 |
Q |
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| T |
9082489 |
taaaaaaaattggaatgtagggtttttgaacagaaggaacattcatatgttc---------------aagattctgaatccaacccatttcaaaaatagg |
9082573 |
T |
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| Q |
204 |
attcaaaaacttcttcttctcacgcgtaatcccttt |
239 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9082574 |
attcaaaaacttcttcttctcacgcgtaatcccttt |
9082609 |
T |
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Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 81 - 171
Target Start/End: Original strand, 4032184 - 4032273
Alignment:
| Q |
81 |
ttgaatgatgaagattgggtttgtnnnnnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa |
171 |
Q |
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| T |
4032184 |
ttgaatgatgaagattgggtttgtaaaataa-ttggaatgtggggtttttgaacagaaggagcattgatatgttcaagcttctgaatccaa |
4032273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 171
Target Start/End: Complemental strand, 621423 - 621261
Alignment:
| Q |
8 |
tcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttgtnnn |
107 |
Q |
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| T |
621423 |
tcctcttcacaaacaaccttgaaatctacaacattggggtgctcagataacttttgacaaagaaaaatgaaggttgaatgatgaagattgggtttgt-aa |
621325 |
T |
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| Q |
108 |
nnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa |
171 |
Q |
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| T |
621324 |
aaaaattggaatgtggggtttttgaacagaaggaacattgatatgttcaaacttctcaatccaa |
621261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 171
Target Start/End: Original strand, 1576733 - 1576895
Alignment:
| Q |
8 |
tcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttgtnnn |
107 |
Q |
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| T |
1576733 |
tcctcttcacaaacaaccttgaaatctacaacattggggtgctcagataacttttgacaaagaaaaatgaaggttgaatgatgaagattgggtttgt-aa |
1576831 |
T |
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| Q |
108 |
nnnnnttggaatgtggggtttttgaacaaaaggaacattcatatgttcaagattctgaatccaa |
171 |
Q |
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| T |
1576832 |
aaaaattggaatgtggggtttttgaacagaaggaacattgatatgttcaaacttctcaatccaa |
1576895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 23833743 - 23833609
Alignment:
| Q |
4 |
atcgtcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttg |
103 |
Q |
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| T |
23833743 |
atcgtcctcttca--aacagccttgaaatctacaacattggggtgctcagataacttttgacaaagaaaaatgaaggttgaatgatgaagattgggtttg |
23833646 |
T |
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| Q |
104 |
tnnnnnnnnttggaatgtggggtttttgaacaaaagga |
141 |
Q |
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| T |
23833645 |
t-aaaaaaattggaatgtggggtttttgaacagaagga |
23833609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 44419350 - 44419446
Alignment:
| Q |
8 |
tcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttgt |
104 |
Q |
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| T |
44419350 |
tcctcttcataaacagccttgagatctacaacatttgggtgcccagataactattgacaaagaaaaatgaaggttgaatgatgaagattgggtttgt |
44419446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 175 - 209
Target Start/End: Original strand, 44419982 - 44420016
Alignment:
| Q |
175 |
ttctgaatccaacacatttcaaaaataggattcaa |
209 |
Q |
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| T |
44419982 |
ttctgaatccaacccatttcaaaaataggattcaa |
44420016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 8 - 104
Target Start/End: Original strand, 104662 - 104758
Alignment:
| Q |
8 |
tcctcttcacaaacagccttgaaatctacaacattggggtgctcatataacttttgataaagaaaaatgaaggttgaatgatgaagattgggtttgt |
104 |
Q |
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||||||||| ||||| |||||| |||||||| ||| |||||| || |||||| ||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
104662 |
tcctcttcataaacaaccttgagatctacaatatttgggtgcccagataactcttgataaagaaaattgaaggttgaatgatgaagattgggtttgt |
104758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 60
Target Start/End: Original strand, 45905150 - 45905202
Alignment:
| Q |
8 |
tcctcttcacaaacagccttgaaatctacaacattggggtgctcatataactt |
60 |
Q |
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| T |
45905150 |
tcctcttcataaacagccttgagatctacaacatttgggtgcccagataactt |
45905202 |
T |
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