View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_high_98 (Length: 236)
Name: NF5814_high_98
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_high_98 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 26733336 - 26733113
Alignment:
| Q |
1 |
ctagttaagtccacgagtagacttaatttacttttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtat |
100 |
Q |
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| T |
26733336 |
ctagttaagtccacgagtagacttaatttacttttgtaacaaagatgcaattctttgtaaaagacacactttggaatgaaaccaaagttgatttatgtat |
26733237 |
T |
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| Q |
101 |
ttttccaaattnnnnnnngaaactggagagaagaaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtga |
200 |
Q |
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| T |
26733236 |
ttttccaaattaaaaaaagaaactggagagaagaaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtga |
26733137 |
T |
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| Q |
201 |
aggcattgattctatgtttcaagt |
224 |
Q |
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|||||||||||||||||||||||| |
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| T |
26733136 |
aggcattgattctatgtttcaagt |
26733113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 29 - 224
Target Start/End: Complemental strand, 26724814 - 26724633
Alignment:
| Q |
29 |
tacttttgtaacaaagatgcaattctttgtaaaagacacactttagaatgaaaccaaagttgatttatgtatttttccaaattnnnnnnngaaactggag |
128 |
Q |
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||||||||| |||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||| ||| ||||||| |||| ||| | |
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| T |
26724814 |
tacttttgtgacaaagatgcaattctttgttaaagacgcactttggaatgaaaccaaagttgatttatgtagtttgccaaatt-aaaaaagaaaatgggg |
26724716 |
T |
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| Q |
129 |
agaagaaaaggtgttttacgtggaagaattggaactttgtatttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagt |
224 |
Q |
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|||||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26724715 |
agaagaaaaggtgttt------gagaaattgga-------atttgagaaagttgttgctcgtgaaaaggtgaaggcattgattctatgtttcaagt |
26724633 |
T |
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