View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_103 (Length: 231)
Name: NF5814_low_103
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_103 |
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Alignment Details
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 52564871 - 52564970
Alignment:
| Q |
1 |
tatcaccatcatatcctactctctttgacccacaagatcaagttcaacaaccatcttattactgccaaacaaaccacttaccacatgatcaagaggtaaa |
100 |
Q |
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| T |
52564871 |
tatcaccatcatatcctactctctttaactcacaagatcaagttcaaaaaccatcttattactgccaaacaaaccacttaccacatgatcaagaggtaaa |
52564970 |
T |
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Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 163 - 225
Target Start/End: Original strand, 52565033 - 52565095
Alignment:
| Q |
163 |
gtagcataattaatcccttccaatattttgtgatttgatcctctttaattaatttgatgatgt |
225 |
Q |
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| T |
52565033 |
gtagcataattaatcccttccaatattttgtgatttgatcctctttaattaatttgatgatgt |
52565095 |
T |
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