View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_104 (Length: 230)
Name: NF5814_low_104
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_104 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 4e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 25801936 - 25802116
Alignment:
| Q |
20 |
cacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaatatcacacaaacaaacagagaagaaacagaacaat |
119 |
Q |
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| T |
25801936 |
cacaagtccaaatcatgccccttccaattataaatacataacaacagttaccattacatatgcaatatcacacaaacaaaaagagaagaaacagaacaat |
25802035 |
T |
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| Q |
120 |
gaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcga |
200 |
Q |
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| T |
25802036 |
gaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcga |
25802116 |
T |
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Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 25816102 - 25816209
Alignment:
| Q |
93 |
aaacaaacagagaagaaacagaacaatgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattc |
192 |
Q |
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||||||| ||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
25816102 |
aaacaaatagagaagaaacagaacaatgaaatacaacgagatatcacatttcagccacccaaaacacaaactaagattcgaacacaacgaatttccattc |
25816201 |
T |
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| Q |
193 |
aaatgcga |
200 |
Q |
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|||||||| |
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| T |
25816202 |
aaatgcga |
25816209 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 19 - 200
Target Start/End: Complemental strand, 112585 - 112415
Alignment:
| Q |
19 |
acacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaatatcacacaaacaaacagagaagaaacagaacaa |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
112585 |
acacaagtccaaatcacgccccttccaattataaatacataacaacagttaccattacatatgcaatatcacacaaacaaacaga-----------acaa |
112497 |
T |
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| Q |
119 |
tgaaatacagtgagatatcccatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcga |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
112496 |
tgaaatacagtgagatatcacatttcagccacccaaaacacaaactaagattcgagcacaacgaatttccattcaaatgcga |
112415 |
T |
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