View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_low_11 (Length: 532)

Name: NF5814_low_11
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_low_11
NF5814_low_11
[»] chr1 (8 HSPs)
chr1 (1-527)||(29449014-29449517)
chr1 (1-59)||(29462304-29462362)
chr1 (338-407)||(29457080-29457149)
chr1 (62-130)||(29462215-29462283)
chr1 (87-161)||(29444247-29444321)
chr1 (87-161)||(29454254-29454328)
chr1 (432-479)||(29456984-29457031)
chr1 (285-337)||(29461783-29461834)
[»] chr2 (7 HSPs)
chr2 (64-161)||(9363665-9363762)
chr2 (87-161)||(12019793-12019867)
chr2 (87-161)||(11988326-11988400)
chr2 (1-46)||(9363583-9363628)
chr2 (87-157)||(12007150-12007220)
chr2 (14-62)||(9069069-9069117)
chr2 (65-165)||(9287782-9287882)
[»] chr8 (1 HSPs)
chr8 (65-161)||(41968300-41968397)
[»] chr7 (1 HSPs)
chr7 (98-162)||(45242651-45242715)


Alignment Details
Target: chr1 (Bit Score: 399; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 1 - 527
Target Start/End: Complemental strand, 29449517 - 29449014
Alignment:
Q  1 agaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcacatc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449517 agaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaaccactagaaacaatttgagcattcgttttcagcttcacatc 29449418  T
Q  101 agtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtnnnnnnnncacatgaatatcatataagtaaactca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  29449417 agtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttgtaaaaaaaacacatgaatatcatataagtaaactca 29449318  T
Q  201 acaaattagctagtcacgtgcatgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttggatctata 300  Q
    |||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  29449317 acaaattagctagtcac----atgggccgaatgtccatgtatcattgctcttatcaataataacctgccacgtcatgtacctatttctgttgg------- 29449229  T
Q  301 aaacaaccttgggcacaaagggatggcattcaaagtctacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaa 400  Q
                |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449228 ------------gcacaaagggatggcattcaaagtctacagcataaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaa 29449141  T
Q  401 aaaatattcaagacatgattnnnnnnngggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttcttgtat 500  Q
    ||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29449140 aaaatattcaagacatgattaaaaaaagggcgtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatatttgtgaagtgtagtttcttgtat 29449041  T
Q  501 tagattttgtgtagtacctttgcttct 527  Q
    |||||||||||||||||||||||||||    
T  29449040 tagattttgtgtagtacctttgcttct 29449014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 29462362 - 29462304
Alignment:
Q  1 agaagtgagatacaaatgggtggagctacattccttatcaattcaatccttcccacaaa 59  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29462362 agaagagagatacaaatgtgtggagctacattccttatcaattcaatccttcccacaaa 29462304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 338 - 407
Target Start/End: Complemental strand, 29457149 - 29457080
Alignment:
Q  338 tacagcagaaaaggattaagagtccaccttatgatattacaacataaaacttaatttgtagaaaaaatat 407  Q
    ||||||||||||||| ||| ||||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  29457149 tacagcagaaaaggaataatagtccacattatgatattacaacataaaacataccttgtagaaaaaatat 29457080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 29462283 - 29462215
Alignment:
Q  62 actagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgt 130  Q
    ||||||||||| ||||||||| | |||| ||| ||||||| |||||||||||||| |||||||||||||    
T  29462283 actagaaacaacttgagcatttggtttctgctacacatcattggttcttctttcattcccttacaatgt 29462215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 29444321 - 29444247
Alignment:
Q  87 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    ||||||| | |||||  |||||||| |||||||||||||||| ||  ||||||||||||| ||||||||| ||||    
T  29444321 ttcagctacgcatcaaaggttcttccttcactcccttacaatttcagtttaaatccttgggacaagaagttatcc 29444247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 29454328 - 29454254
Alignment:
Q  87 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    ||||||| |||||||  | |||||| |||||||| ||||||| || ||||||||||| || ||||||||||||||    
T  29454328 ttcagctacacatcaaagattcttccttcactccattacaatttcaatttaaatcctcgggacaagaagtcatcc 29454254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 432 - 479
Target Start/End: Complemental strand, 29457031 - 29456984
Alignment:
Q  432 gtttttgtgtgaaaatgccttgtaggtttcttttgcaagtacatattt 479  Q
    |||||||||||||||| | ||||||||||||||||| |||||| ||||    
T  29457031 gtttttgtgtgaaaatactttgtaggtttcttttgcgagtacaaattt 29456984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 285 - 337
Target Start/End: Complemental strand, 29461834 - 29461783
Alignment:
Q  285 ttctgttggatctataaaacaaccttgggcacaaagggatggcattcaaagtc 337  Q
    |||| ||||||||||||||||||||| ||||| |||| |||||| ||||||||    
T  29461834 ttctattggatctataaaacaaccttaggcac-aaggaatggcagtcaaagtc 29461783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 161
Target Start/End: Original strand, 9363665 - 9363762
Alignment:
Q  64 tagaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    ||||||||| ||||| || ||  ||||||| ||||||  |||||||||| |||||||||||||||| | |||||||||||||| ||||||||||||||    
T  9363665 tagaaacaacttgagtatccggcttcagctacacatccctggttcttctatcactcccttacaatgacaatttaaatccttgggacaagaagtcatcc 9363762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 12019867 - 12019793
Alignment:
Q  87 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    ||||||| |||||||  | |||||| ||||||||||||||||||| |||||||||||| | ||||||||||||||    
T  12019867 ttcagctacacatcaacgattcttccttcactcccttacaatgtcaatttaaatcctttggacaagaagtcatcc 12019793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 87 - 161
Target Start/End: Complemental strand, 11988400 - 11988326
Alignment:
Q  87 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    ||||||| |||| ||  |||||||| ||||||||||||||||||| ||||||||||||   ||||||||||||||    
T  11988400 ttcagctacacaacaaaggttcttccttcactcccttacaatgtcaatttaaatccttttgacaagaagtcatcc 11988326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 9363583 - 9363628
Alignment:
Q  1 agaagtgagatacaaatgggtggagctacattccttatcaattcaa 46  Q
    ||||| ||||||||||||| ||||||||||||||||||||||||||    
T  9363583 agaagagagatacaaatggatggagctacattccttatcaattcaa 9363628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 12007220 - 12007150
Alignment:
Q  87 ttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtc 157  Q
    ||||||| ||||| |  |||||||| ||||||||||||||| ||| ||||||||||| || ||| ||||||    
T  12007220 ttcagctacacataacaggttcttccttcactcccttacaaggtcaatttaaatcctcgggacaggaagtc 12007150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 14 - 62
Target Start/End: Complemental strand, 9069117 - 9069069
Alignment:
Q  14 aaatgggtggagctacattccttatcaattcaatccttcccacaaacca 62  Q
    ||||||||| |||| ||||| |||||||||||| | |||||||||||||    
T  9069117 aaatgggtgcagcttcattctttatcaattcaacctttcccacaaacca 9069069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 9287782 - 9287882
Alignment:
Q  65 agaaacaatttgagcattcgttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatccttg 164  Q
    |||||||| |||||||| |  |||||||| |||||||  ||| ||||  ||  ||||||||||| || ||||||||||| || |||| ||||| ||||||    
T  9287782 agaaacaacttgagcatcctgtttcagctgcacatcacaggtacttccatccatcccttacaatctcaatttaaatcctcgggacaaaaagtcgtccttg 9287881  T
Q  165 t 165  Q
    |    
T  9287882 t 9287882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 161
Target Start/End: Complemental strand, 41968397 - 41968300
Alignment:
Q  65 agaaacaatttgagcattc-gttttcagcttcacatcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcc 161  Q
    |||||||| |||||||| | | |||||||| |||||||  ||| |||| |||  ||||||||||| || |||||||||||||| ||||||||||||||    
T  41968397 agaaacaacttgagcatcctggtttcagctgcacatcacaggtccttccttccatcccttacaatctcaatttaaatccttgggacaagaagtcatcc 41968300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 45242651 - 45242715
Alignment:
Q  98 atcagtggttcttctttcactcccttacaatgtcgatttaaatccttggtacaagaagtcatcct 162  Q
    |||| ||||||||| ||  ||| ||| ||||||| |||||||||| ||| |||||||||||||||    
T  45242651 atcactggttcttccttggctctctttcaatgtcaatttaaatccctggaacaagaagtcatcct 45242715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University