View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_low_115 (Length: 208)
Name: NF5814_low_115
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_115 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 14 - 181
Target Start/End: Complemental strand, 3248351 - 3248184
Alignment:
| Q |
14 |
aaaataatataaacaaccgaatatatagttcctcaaataaatgctgctcaaaataatggaacagaaaagttatagcattggctcatatagataggaacat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3248351 |
aaaataatataaacaaccgaatatatagttcctcaaataaatgctgctcaaaataatggaacagaaaagttatagcattggctcatatagataggaacat |
3248252 |
T |
|
| Q |
114 |
atctaccagaaattaccatattattaatgatggtatggaagggtgaaactagggaaatctactatatg |
181 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
3248251 |
atctaccagaaattaccacattattaatgatggtatggaagggtgaaactagggaaatctactctatg |
3248184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University