View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_116 (Length: 203)
Name: NF5814_low_116
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_116 |
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Alignment Details
Target: chr4 (Bit Score: 157; Significance: 1e-83; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 21123592 - 21123424
Alignment:
| Q |
18 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
117 |
Q |
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| T |
21123592 |
tatccagcatggtgaccaagatcctcaatagaaggaccaccagaatcaccgaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
21123493 |
T |
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| Q |
118 |
gagaatgatcaccgtgaattacattaactgattgctttgggaataagttgaagcttcttataagctttt |
186 |
Q |
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| T |
21123492 |
gagaatgatcaccatgaattacattaactgattgctttgggaataagttgaagcttcttataagctttt |
21123424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 21143515 - 21143347
Alignment:
| Q |
18 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
117 |
Q |
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||||| ||||| ||||||||||| |||||||| |||||| |||||||| |||||||||||||||||||||||||| ||||| || | ||||||||||| |
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| T |
21143515 |
tatccggcatgatgaccaagatcttcaatagaaggaccattagaatcactaaaaaacgagaacttcttctcgacgagttttccagggacaaaatgatcaa |
21143416 |
T |
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| Q |
118 |
gagaatgatcaccgtgaattacattaactgattgctttgggaataagttgaagcttcttataagctttt |
186 |
Q |
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| T |
21143415 |
tagagtgatcaccatgaattatattaactggatcctttggcaataagttaaagctttttataagctttt |
21143347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 18 - 118
Target Start/End: Complemental strand, 21149326 - 21149226
Alignment:
| Q |
18 |
tatccagcatggtgaccaagatcctcaatagacggaccaccagaatcaccaaaaaacgagaacttcttctcgacgatctttccgggtagaaaatgatcaa |
117 |
Q |
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||||| |||||||||||||||| |||||||| | ||| |||||| |||||||||||||||||| ||||| ||||||||||| || | ||||| ||||| |
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| T |
21149326 |
tatccggcatggtgaccaagattatcaatagaaagcccatcagaatgaccaaaaaacgagaactttttctccacgatctttccagggacaaaatcatcaa |
21149227 |
T |
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| Q |
118 |
g |
118 |
Q |
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| |
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| T |
21149226 |
g |
21149226 |
T |
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