View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_low_14 (Length: 513)
Name: NF5814_low_14
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 3 - 494
Target Start/End: Original strand, 11592401 - 11592892
Alignment:
| Q |
3 |
catgtccaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg |
102 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592401 |
catgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg |
11592500 |
T |
|
| Q |
103 |
tcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11592501 |
tcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatc |
11592600 |
T |
|
| Q |
203 |
aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtccca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11592601 |
aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtccca |
11592700 |
T |
|
| Q |
303 |
tctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgc |
402 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11592701 |
tttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgc |
11592800 |
T |
|
| Q |
403 |
atcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11592801 |
atcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcct |
11592892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 3 - 494
Target Start/End: Complemental strand, 11645718 - 11645227
Alignment:
| Q |
3 |
catgtccaagaatatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg |
102 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645718 |
catgtccaaaaacatgacccaacaaagcaaccaataaacaataacccatagccctaaaataaacaggataaatcttactctggaccacagcaaattgttg |
11645619 |
T |
|
| Q |
103 |
tcttggcataaccctagacaaaacataactagaaacaaatgttatccaaacattcattccataaccacttgaaaatcccaataaattcaacaaactcatc |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
11645618 |
tcttggcataaccctagacaaaacataactagaaacaaatgtgatccaaacattcattccataaccacttgaaaatcccaacaaattcaacaaactcatc |
11645519 |
T |
|
| Q |
203 |
aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcttcggtcacgttgtgaacaacatgttccttaaacgtttgtccca |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
11645518 |
aatgattcaactctctccattgataatgacataaacttcttcacaccgtctttcgcctcggtcacgttgtgaacaacatgttctttaaacgtttgtccca |
11645419 |
T |
|
| Q |
303 |
tctctttccctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgc |
402 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11645418 |
tttctttgcctttttctaatgacccttttgtgtattcttgaacattatcataaacatcatttgctttatcataaactctctctttagcattatcaactgc |
11645319 |
T |
|
| Q |
403 |
atcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaatatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
11645318 |
atcaacaacattgttaccaacttctttcactgcttctttgtttgaattaacaatatctctcttcttatcaattgtttctgaggctttatcct |
11645227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 193; Significance: 1e-104; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 158 - 494
Target Start/End: Complemental strand, 37181056 - 37180721
Alignment:
| Q |
158 |
attccataaccacttgaaaatccc-aataaattcaacaaactcatcaatgattcaactctctccattgataatgacataaacttcttcacaccgtctttc |
256 |
Q |
| |
|
|||||||||||||||| ||||||| || ||||||||| || |||||||||||||||||||||| |||||||||| ||||||||| |||||||||| |
|
|
| T |
37181056 |
attccataaccacttgcaaatccctaacaaattcaactctttcgtcaatgattcaactctctccatagataatgacacaaacttctttacaccgtcttat |
37180957 |
T |
|
| Q |
257 |
gcttcggtcacgttgtgaacaacatgttccttaaacgtttgtcccatctctttc-cctttttctaatgacccttttgtgtattcttgaacattatcataa |
355 |
Q |
| |
|
| ||||||||||| | ||||||||||||| || ||||||||||| | ||| |||||||| ||||||||||||||| | |||||||||||||||||| |
|
|
| T |
37180956 |
gtctcggtcacgtt---accaacatgttccttcaatgtttgtcccatttttttttcctttttccaatgacccttttgtggaatcttgaacattatcataa |
37180860 |
T |
|
| Q |
356 |
acatcatttgctttatcataaactctctctttagcattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgaataaacaa |
455 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
37180859 |
acatcattagctttatcataaactttctctttaacattatcaactgcatcaacaacattgttaccaacttctttcactgcttctttgtttgcataaacaa |
37180760 |
T |
|
| Q |
456 |
tatctctcttcttatcaattgtttctgaagctttatcct |
494 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
37180759 |
tatctctcttcttatcaattgtttatgaggctttatcct |
37180721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University