View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_16 (Length: 482)
Name: NF5814_low_16
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_16 |
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| [»] chr4 (2 HSPs) |
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| [»] scaffold0026 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 11 - 482
Target Start/End: Complemental strand, 25802859 - 25802388
Alignment:
| Q |
11 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
25802859 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatattccatgatattcaagccctagacat |
25802760 |
T |
|
| Q |
111 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttc |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802759 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttc |
25802660 |
T |
|
| Q |
211 |
accttctttcctttacttcctctacttcctctgcaattatgtgcagcgtacaatgtattctgtaaactaggaatagtggcgtcaagtttcctgctacttc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
25802659 |
accttctttcctttacttcctctacttcctctgcaattatgtgcagcgtacaatgtattctgtaaactaggaatagtggcctcaagtttcctgctacttc |
25802560 |
T |
|
| Q |
311 |
ctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctcacacaagccacatgcaaattgtaactcttacagttcgatctataact |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
25802559 |
ctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctcacacaggccacatgcaaattgtaactcttacagttcgatctataact |
25802460 |
T |
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| Q |
411 |
ccaactacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttc |
482 |
Q |
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| T |
25802459 |
ccagctacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttc |
25802388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 306 - 482
Target Start/End: Complemental strand, 25816607 - 25816438
Alignment:
| Q |
306 |
acttcctttaccatgtcccatatataagttgtaccaattttccaccagcatttccctc--acacaagccacatgcaaattgtaactcttacagttcgatc |
403 |
Q |
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|||||||||||||||| |||||||||| ||| |||||| ||||||| ||||||||| |||||||| |||||||||||||||||| || | |
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| T |
25816607 |
acttcctttaccatgttccatatataaattgagccaattctccaccaacatttccctataacacaagcaacatgcaaattgtaactc---------gacc |
25816517 |
T |
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| Q |
404 |
tataactccaactacgtccttttcttccgcaacggtgacatggtgaactcactttcctgtgaaggtaaagtttcatttc |
482 |
Q |
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|||||||||| ||||||||||||||||| |||||||||||||||||||||||||| || | |||||||||||||||||| |
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| T |
25816516 |
tataactccagctacgtccttttcttccacaacggtgacatggtgaactcacttttctataaaggtaaagtttcatttc |
25816438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 259
Target Start/End: Original strand, 105595 - 105845
Alignment:
| Q |
11 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
105595 |
catcatcatcatgtggtactaaacaaaactaacatacacgtcacaacaaaagacaaaagatagattctgttatgttccatgatattcaagccctagacat |
105694 |
T |
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| Q |
111 |
gagtgccccaacaacaccagcaatgagagtcgtaggatcacccaaaacagctgaaatcacaatctgcaccgcaaatccagcaatctcacaacac--tttt |
208 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
105695 |
gagcgccccaacaacaccagcaatgagagtcgtaggatcacccaaaaccgctgaaatcacaatctgcaccgcaaatccagcaatctcacaacactttttt |
105794 |
T |
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| Q |
209 |
tcaccttctttcctttacttcctctacttcctctgcaattatgtgcagcgt |
259 |
Q |
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| T |
105795 |
tcaccttctttcctttacttcctctacttcctctgcaattatgtgcagcgt |
105845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 254 - 447
Target Start/End: Original strand, 108620 - 108813
Alignment:
| Q |
254 |
cagcgtacaatgtattctgtaaactaggaatagtggcgtcaagtttcctgctacttcctttaccatgtcccatatataagttgtaccaattttccaccag |
353 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
108620 |
cagcgtacaatgtattctgtaaactaggaataatggcctcaagtttcctgctacttcctttaccatgtcccatatataagttgtaccaattttccaccag |
108719 |
T |
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| Q |
354 |
catttccctcacacaagccacatgcaaattgtaactcttacagttcgatctataactccaactacgtccttttcttccgcaacggtgacatggt |
447 |
Q |
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| T |
108720 |
catttccctcacacaagccacatgtaaattgtaactcttacagttcgatctataactccagctacgtgcttttctcccacaacggtgacatggt |
108813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 443 - 482
Target Start/End: Original strand, 112104 - 112143
Alignment:
| Q |
443 |
atggtgaactcactttcctgtgaaggtaaagtttcatttc |
482 |
Q |
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| T |
112104 |
atggtgaactcactttcctgtaaaggtaaagtttcatttc |
112143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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