View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_21 (Length: 471)
Name: NF5814_low_21
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 36 - 366
Target Start/End: Complemental strand, 20597945 - 20597615
Alignment:
| Q |
36 |
atgggtggtggctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcct |
135 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597945 |
atgggtggtggctgaagatcagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcct |
20597846 |
T |
|
| Q |
136 |
tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcct |
235 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
20597845 |
tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtagccatttcct |
20597746 |
T |
|
| Q |
236 |
gcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaata |
335 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20597745 |
gcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaata |
20597646 |
T |
|
| Q |
336 |
taacatttcataaaattaatatcactactaa |
366 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
20597645 |
taacatttcataaaattaatatcactactaa |
20597615 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 376 - 458
Target Start/End: Complemental strand, 20597514 - 20597432
Alignment:
| Q |
376 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacacgatgatgtcc |
458 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
20597514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacactctgatgtcc |
20597432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 36 - 364
Target Start/End: Complemental strand, 8698946 - 8698618
Alignment:
| Q |
36 |
atgggtggtggctgaagattagtgtactcagtcctttgccataaactttgaccattagctggataaatggaactactgtaacatgctacatatttgtcct |
135 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |
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| T |
8698946 |
atgggtggtggctgaagatcagtgtactcagtcctttgccataaactttgaccattagccggataaatggaactagagtaacatgctacatatttgtcct |
8698847 |
T |
|
| Q |
136 |
tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctattagtagccatttcct |
235 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
8698846 |
tcatgaagatatctggaacaaagtcaaatatgttcatgtcgaacttcttcatacatgaaatagcatgacagcagggcaatcctgttagtaaccatttcct |
8698747 |
T |
|
| Q |
236 |
gcagtcacaagaccatctttgcaggttgacatgaaacttgtcaccacttaaagaaacatgcctaacttcataatcaaactcatttgcacgcctacaaata |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8698746 |
gcagtcacaagaccatctttgcaggttgacatgaaacttgtgaccagttaaagaaacatgtctaacttcataatcaaactcatttgcacgcctacaaata |
8698647 |
T |
|
| Q |
336 |
taacatttcataaaattaatatcactact |
364 |
Q |
| |
|
|||||||||||||||||| |||| ||||| |
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|
| T |
8698646 |
taacatttcataaaattagtatcgctact |
8698618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 376 - 448
Target Start/End: Complemental strand, 8698514 - 8698442
Alignment:
| Q |
376 |
tgttgggtaacacaccatccttcaacattgcagctttctgcctgtttgcttcccatctctccatcaagtacac |
448 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
8698514 |
tgttgggtaacacaccatcctccaacattgcagctttctgcctgtttgcttcccatctctccatcaggtacac |
8698442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 410 - 448
Target Start/End: Original strand, 37101837 - 37101875
Alignment:
| Q |
410 |
tttctgcctgtttgcttcccatctctccatcaagtacac |
448 |
Q |
| |
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||||||||| |||||||||||||||||||||| |||||| |
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| T |
37101837 |
tttctgcctatttgcttcccatctctccatcaggtacac |
37101875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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