View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_22 (Length: 469)
Name: NF5814_low_22
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_22 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 11 - 230
Target Start/End: Original strand, 27219304 - 27219523
Alignment:
| Q |
11 |
cacagacatattggctagacgagtgagagtggtgatggacatgtttggcccatgctagtacaacatcattcatcattggaagagtatcgacaacattgtc |
110 |
Q |
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| T |
27219304 |
cacagacatattggctagacgagtgagagtggtgatggacatgtttggcccatgctagtgcaacatcattcatcattggaagagtatcgacaacattgtc |
27219403 |
T |
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| Q |
111 |
atattacaagaggttatacattctatgaaattcaagaaaagaaaggttgggtagatgagtataaaaattgacttggctgctagttaacattacaaatcta |
210 |
Q |
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| T |
27219404 |
atagtacaagagtttatgcattctatgaaattcaagaaaagaaaggttgggtagatgagtataaaaattgacttggctgctagttaacattacaaatcta |
27219503 |
T |
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| Q |
211 |
tgttcgtatctcctcgtcta |
230 |
Q |
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| T |
27219504 |
tgttcgtatctcctcgtcta |
27219523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 311 - 452
Target Start/End: Original strand, 27219519 - 27219662
Alignment:
| Q |
311 |
gtctaaatataggtttggtttgaagggtaataatatggagaatgagaaatgagattatac--taattaagctaagtatcaaataatatgaattaagttat |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
27219519 |
gtctaaatataggtttggtttgaagggtaataatatggagaatgggaaatgagattatacactaattaagctaagtatcaaataatatgaattaagttat |
27219618 |
T |
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| Q |
409 |
atctatagccattttgttttgtgctatttatagtagcttaaaaa |
452 |
Q |
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| T |
27219619 |
atctatagccaatttgttttgtgctatttatagtagcttaaaaa |
27219662 |
T |
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