View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_33 (Length: 421)
Name: NF5814_low_33
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 48 - 398
Target Start/End: Complemental strand, 224254 - 223905
Alignment:
| Q |
48 |
taaatataaataccacataataatgacttctataaaatgaatgttataaggaaaaaaggcctgnnnnnnntgtgatactatattttgttcaagtcaaaaa |
147 |
Q |
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| T |
224254 |
taaatataaataccacataataatgacttctataaaatgaatgttataaggaaaaaaggcctgaaaaaaatgtgatactatattttgttcaagtcaaaaa |
224155 |
T |
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| Q |
148 |
agaattaccttatccatttattcttcaatgtagattcaattcttgtgggtcaaaacagtccttaacnnnnnnnntaaactcaaattaatcatgtcatttt |
247 |
Q |
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| T |
224154 |
agaattaccttatccatttattcttcaatgtagattcaattcttgtgggtcaaaacagtccttaacaaaaaaaataaactcaaattaatcatgtcatttt |
224055 |
T |
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| Q |
248 |
tatattggggacaaattattttctctgatatattaagttaaagactaatttgtctatagtatgaaaatttcaagagattaattcatgtattttatgtcaa |
347 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||| |
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| T |
224054 |
tatattggggacaaattattttctctgatatattaagttaaagactaatttgtctatagtatgaaaatttc-agagattaattgaagtattttatgtcaa |
223956 |
T |
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| Q |
348 |
agacttaattaaccccttaaaaaattgtgagagtctgaattgaattcaatc |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
223955 |
agacttaattaaccccttaaaaaattgtgagagtctgaattgaattcaatc |
223905 |
T |
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