View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_35 (Length: 420)
Name: NF5814_low_35
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_35 |
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| [»] scaffold0004 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 22 - 408
Target Start/End: Original strand, 41732322 - 41732709
Alignment:
| Q |
22 |
gtgcatccatgggaaatacattaacttaacttcgctgtgttaaattaatccaactttttctaatcttctcgcgatttacttttttcctcacccaaaattt |
121 |
Q |
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| T |
41732322 |
gtgcatccatgggaaatacattaacttaacttcgctgtgttaaattaatccaactttttctaatcttctcgcgatttacttttttcctcacccaaaattt |
41732421 |
T |
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| Q |
122 |
tgttctactctctttatcgcaactactaataagtttgatttatttagaagaaagaaagaacaaggaaggaaaagttcgtttta-gttttttctttcatag |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
41732422 |
tgttctactctctttatcgcaactactaataagtttgatttatttagaagaaagaaagaacaaggaaggaaaagttcgttttatgttttttctttcatag |
41732521 |
T |
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| Q |
221 |
ttgacatgtcaannnnnnnaattaattattaaaaactaaaatgattattattgttgttgaaaacatggtctaagaataacttttgactttcatccgtatg |
320 |
Q |
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| T |
41732522 |
ttgacatgtcaatttttttaattaattattaaaaactaaaatgattattattgttgttgaaaacatggtctaagaataacttttgactttcatccgtatg |
41732621 |
T |
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| Q |
321 |
tatgaaaaatgaagttaggatcgttatacattcttattctttcatcaaagttgtactaaatggttgttcaaatatcattgttcttctc |
408 |
Q |
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| T |
41732622 |
tatgaaaaatgaagttaggatcgttgtatattcttattctctcatgaaagttgtattaaatggttgttcaaatatcattgctcttctc |
41732709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 362 - 407
Target Start/End: Complemental strand, 48561723 - 48561678
Alignment:
| Q |
362 |
tcatcaaagttgtactaaatggttgttcaaatatcattgttcttct |
407 |
Q |
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| T |
48561723 |
tcatgaaagttataccaaatggttgttcaaatatcattgttcttct |
48561678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 370 - 404
Target Start/End: Original strand, 51571667 - 51571701
Alignment:
| Q |
370 |
gttgtactaaatggttgttcaaatatcattgttct |
404 |
Q |
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| T |
51571667 |
gttgtaccaaatggttgttcaaatatcattgttct |
51571701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 365 - 402
Target Start/End: Complemental strand, 25098718 - 25098681
Alignment:
| Q |
365 |
tcaaagttgtactaaatggttgttcaaatatcattgtt |
402 |
Q |
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| T |
25098718 |
tcaaggttgtaccaaatggttgttcaaatatcattgtt |
25098681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 368 - 405
Target Start/End: Original strand, 44959080 - 44959117
Alignment:
| Q |
368 |
aagttgtactaaatggttgttcaaatatcattgttctt |
405 |
Q |
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| T |
44959080 |
aagttgtatcaaatggttgttcaaatatcattgttctt |
44959117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 362 - 402
Target Start/End: Original strand, 240147 - 240187
Alignment:
| Q |
362 |
tcatcaaagttgtactaaatggttgttcaaatatcattgtt |
402 |
Q |
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| T |
240147 |
tcatgaaagttgtactaagtggttgttcaaatatcattgtt |
240187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 368 - 407
Target Start/End: Original strand, 55511006 - 55511045
Alignment:
| Q |
368 |
aagttgtactaaatggttgttcaaatatcattgttcttct |
407 |
Q |
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| T |
55511006 |
aagttgtaccaaatggttgttcaaatatcattgctcttct |
55511045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 400
Target Start/End: Original strand, 981621 - 981649
Alignment:
| Q |
372 |
tgtactaaatggttgttcaaatatcattg |
400 |
Q |
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| T |
981621 |
tgtactaaatggttgttcaaatatcattg |
981649 |
T |
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