View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5814_low_37 (Length: 385)

Name: NF5814_low_37
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5814_low_37
NF5814_low_37
[»] chr4 (4 HSPs)
chr4 (1-189)||(55993873-55994061)
chr4 (84-133)||(27123324-27123373)
chr4 (97-146)||(6428080-6428129)
chr4 (98-179)||(19394689-19394770)
[»] chr7 (2 HSPs)
chr7 (68-129)||(33645937-33645998)
chr7 (89-178)||(39542227-39542316)
[»] chr6 (3 HSPs)
chr6 (84-133)||(2460123-2460172)
chr6 (84-133)||(34939562-34939611)
chr6 (97-133)||(31594356-31594392)
[»] chr5 (1 HSPs)
chr5 (85-128)||(41016228-41016271)
[»] chr8 (4 HSPs)
chr8 (79-133)||(30600321-30600375)
chr8 (84-133)||(26371014-26371063)
chr8 (97-133)||(30987963-30987999)
chr8 (85-133)||(40280198-40280246)
[»] chr3 (2 HSPs)
chr3 (96-133)||(49605823-49605860)
chr3 (84-132)||(1810026-1810074)
[»] chr1 (2 HSPs)
chr1 (81-133)||(4548767-4548819)
chr1 (68-132)||(27140511-27140575)


Alignment Details
Target: chr4 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 55994061 - 55993873
Alignment:
Q  1 agaaatcaaaaaactgataagtagtagtagagtttcttttgatgacaacaacaatggaatgaagtttttatgcaaatcaactaaaaacaactcacagaca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  55994061 agaaatcaaaaaactgataagtagtagtagagtttcttttgatgacaacaacaatggaatgaagtttttatgcaaatcaactaaaatcaactcacagaca 55993962  T
Q  101 tgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaattcatacatga 189  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  55993961 tgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttacccgtaaataaactcaaataaatcaattcatacatga 55993873  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 27123373 - 27123324
Alignment:
Q  84 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  27123373 aaaacaacttaaagacatgtcataagttgtttccataagctctctcaaac 27123324  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 6428080 - 6428129
Alignment:
Q  97 gacatgtcataagtagtttccataaactctctcaaactgcctgacaagtg 146  Q
    |||||||||||||| |||| ||||| ||||||||||||| || |||||||    
T  6428080 gacatgtcataagttgttttcataatctctctcaaactgtctcacaagtg 6428129  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 19394770 - 19394689
Alignment:
Q  98 acatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaat 179  Q
    |||||| |||||| ||||| |||| ||||  ||||| | || ||||||| |||| ||||||  |||||||||||||||||||    
T  19394770 acatgtaataagttgtttctataagctctggcaaacagtctcacaagtgtttttgctcgtagttaaactcaaataaatcaat 19394689  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 33645998 - 33645937
Alignment:
Q  68 ttatgcaaatcaactaaaaacaactcacagacatgtcataagtagtttccataaactctctc 129  Q
    ||||| |||| | |||||||||||| | ||||||||||||||| |||||||||| |||||||    
T  33645998 ttatggaaataacctaaaaacaacttatagacatgtcataagttgtttccataagctctctc 33645937  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 178
Target Start/End: Complemental strand, 39542316 - 39542227
Alignment:
Q  89 aactcacagacatgtcataagtagtttccataaactctctcaaactgcctgacaagtggttttactcgtaactaaactcaaataaatcaa 178  Q
    |||| |||||||||||||||||  ||||||||| |||||| |||||| ||  |||||| || | || |||  ||||||||||||| ||||    
T  39542316 aactgacagacatgtcataagttatttccataagctctctaaaactgtctcgcaagtgcttatgctagtagataaactcaaataagtcaa 39542227  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 84 - 133
Target Start/End: Complemental strand, 2460172 - 2460123
Alignment:
Q  84 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||| | ||||||||||||||| |||||||||| |||||||||||    
T  2460172 aaaacaacttaaagacatgtcataagttgtttccataagctctctcaaac 2460123  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 34939562 - 34939611
Alignment:
Q  84 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||| || ||| |||||||||| |||||||||| |||||||||||    
T  34939562 aaaacaacttacggacgtgtcataagttgtttccataagctctctcaaac 34939611  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 31594392 - 31594356
Alignment:
Q  97 gacatgtcataagtagtttccataaactctctcaaac 133  Q
    |||||||||||||| |||||||||| |||||||||||    
T  31594392 gacatgtcataagttgtttccataacctctctcaaac 31594356  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 128
Target Start/End: Original strand, 41016228 - 41016271
Alignment:
Q  85 aaacaactcacagacatgtcataagtagtttccataaactctct 128  Q
    |||||||||||| ||||| ||||||| |||||||||||||||||    
T  41016228 aaacaactcacaaacatgccataagttgtttccataaactctct 41016271  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 30600375 - 30600321
Alignment:
Q  79 aactaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||||||||||   ||||||||| ||| |||||||||| |||||||||||    
T  30600375 aactaaaaacaactcatgaacatgtcatgagttgtttccataagctctctcaaac 30600321  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 133
Target Start/End: Original strand, 26371014 - 26371063
Alignment:
Q  84 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||| ||  ||||||||||||||||||||||||  ||||||||||    
T  26371014 aaaacaactgacgcacatgtcataagtagtttccataagatctctcaaac 26371063  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 30987999 - 30987963
Alignment:
Q  97 gacatgtcataagtagtttccataaactctctcaaac 133  Q
    |||||||||||||| |||||||||| |||||||||||    
T  30987999 gacatgtcataagttgtttccataagctctctcaaac 30987963  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 85 - 133
Target Start/End: Complemental strand, 40280246 - 40280198
Alignment:
Q  85 aaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    |||||||| ||| | || |||||||| ||||||||||||||||||||||    
T  40280246 aaacaacttacaaatatttcataagttgtttccataaactctctcaaac 40280198  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 133
Target Start/End: Complemental strand, 49605860 - 49605823
Alignment:
Q  96 agacatgtcataagtagtttccataaactctctcaaac 133  Q
    ||||||||||||||| |||||||| |||||||||||||    
T  49605860 agacatgtcataagttgtttccatgaactctctcaaac 49605823  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 84 - 132
Target Start/End: Original strand, 1810026 - 1810074
Alignment:
Q  84 aaaacaactcacagacatgtcataagtagtttccataaactctctcaaa 132  Q
    |||||||||||  |||||||||||||| |||||| ||| ||||||||||    
T  1810026 aaaacaactcatggacatgtcataagttgtttccgtaagctctctcaaa 1810074  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 4548767 - 4548819
Alignment:
Q  81 ctaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaac 133  Q
    |||||||||||| |||| |||||||||||| |||||||| |  ||||||||||    
T  4548767 ctaaaaacaacttacaggcatgtcataagttgtttccattaggtctctcaaac 4548819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 27140511 - 27140575
Alignment:
Q  68 ttatgcaaatcaactaaaaacaactcacagacatgtcataagtagtttccataaactctctcaaa 132  Q
    |||||||||| | || ||||||||| |  |||||||||||||  |||||| ||||||||||||||    
T  27140511 ttatgcaaataagctgaaaacaacttatggacatgtcataagctgtttccttaaactctctcaaa 27140575  T

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