View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_47 (Length: 354)
Name: NF5814_low_47
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_47 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 334
Target Start/End: Complemental strand, 23741650 - 23741326
Alignment:
| Q |
10 |
attatacttagtcgaaactactctttgtgataaagttttcaaattattttgaatagcatttgaagatccacaagagaaccaagtgaaatggtggtcgaaa |
109 |
Q |
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| T |
23741650 |
attatacttcgtcgaaactactctttgtgataaagttttcaaattattttgaatagcatttgaaaatccacaagagaaccaagggaaatggtggttgaaa |
23741551 |
T |
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| Q |
110 |
agccaacgtaaattcagctgttggctgaggtggaaatttaacatagtgaaattctaaagcaaaacattatttttcttttacataaggaagaaaagttagt |
209 |
Q |
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|||||| ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23741550 |
agccaatgtaaattcagcagttggcagaggtggaaatttaacatagtgaaattctaaagcaaaacattatttttcttttacataaggaagaaaagttagt |
23741451 |
T |
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| Q |
210 |
tttggaattttatcaacaacttattttgtttttaaaacagttgcagcctcaaagacaattctactaagtttttgtggattatacacaatttcaaagtaaa |
309 |
Q |
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|||||||||||||| | || | ||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
23741450 |
tttggaattttatcgataattgtttttgtttttaaaacagttgcagcctcaatgacaattcaactaagtttttgtggattatacacaatttaaaagtaaa |
23741351 |
T |
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| Q |
310 |
tctggaaagcttgaatttcttgcat |
334 |
Q |
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| T |
23741350 |
tatggaaagcttgaatttcttgcat |
23741326 |
T |
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