View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_49 (Length: 345)
Name: NF5814_low_49
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_49 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 328
Target Start/End: Complemental strand, 36349814 - 36349499
Alignment:
| Q |
10 |
catcatcatcatcaaggaaaaaatattcactcttcttcaagaatgtcaataccatctgagaggcacatgttccttcaaacaggaaatggttctagtgatt |
109 |
Q |
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| T |
36349814 |
catcatcatcatcaaggaaaaaatattcactcttcttcaagaatgtcaataccatctgagaggcacatgttccttcaaacaggaaatggttctagtgatt |
36349715 |
T |
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| Q |
110 |
caggacttgtgctctcaacagatgcaaaacctagattaaaatggacacctgatcttcatgcaaggtttatcgaagcagttaatcagttaggcggagcgga |
209 |
Q |
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| T |
36349714 |
caggacttgtgctctcaacagatgcaaaacctagattaaaatggacacctgatcttcatgcaaggtttatcgaagcagttaatcagttaggcggagcgga |
36349615 |
T |
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| Q |
210 |
cagtaagtatacatatactcactctcttttggtttggatcatcaaatcttgagtaacatagaattttaatttactaatgaaaatttaattattaccatct |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| |
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| T |
36349614 |
cagtaagtatacatatactcactctcttttggtttggatcatcaaatcttgagtaacatagaattttaatttactaaagaaaattta---attaccatct |
36349518 |
T |
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| Q |
310 |
ttctatttcagaggcaact |
328 |
Q |
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||||||||||||||||||| |
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| T |
36349517 |
ttctatttcagaggcaact |
36349499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 194
Target Start/End: Complemental strand, 10294386 - 10294298
Alignment:
| Q |
106 |
gattcaggacttgtgctctcaacagatgcaaaacctagattaaaatggacacctgatcttcatgcaaggtttatcgaagcagttaatca |
194 |
Q |
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| T |
10294386 |
gattcaggacttgttctttcaactgatgctaagccaagactaaaatggacaccagatcttcatgaacgtttcattgaagcagtcaatca |
10294298 |
T |
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