View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_51 (Length: 340)
Name: NF5814_low_51
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_51 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 55075118 - 55074803
Alignment:
| Q |
1 |
cgcagaacatgaagagtctatgcaaggaaggtgacaaccccttaactagttccccatatagaaatagagaaatattacgtcaacacaactatacctgcac |
100 |
Q |
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| T |
55075118 |
cgcagaacatgaagagtctatgcaaggaaggtgacatccacttaactagttccccatatagaaatagagaaatattacgtcaacacaactatacctgcac |
55075019 |
T |
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| Q |
101 |
aaatgaaaactactattaatgtataatccttacattacatgtgaaattgaatttaaatatgcagaaaatattttgatatagatgtcagtttaaccatgca |
200 |
Q |
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| T |
55075018 |
aaatgaaaactactgttaatgtataatccttacattacatgtgaaattgaatttaaatatgcagaaaatattttgatatagatgtcagtttaaccatgca |
55074919 |
T |
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| Q |
201 |
attaataatgtcattgaaggttgattcaattagtaagtatccaatatccaacaaaaacatgtgtgtgtccaccctgagtccctgatcttgatgattccag |
300 |
Q |
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| T |
55074918 |
attaataatgtcattgaaggttgattcaattagtaagtatccaatatccaacaaaaacatgtgtgtgtcca--------ccctaatcttgatgattccag |
55074827 |
T |
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| Q |
301 |
atccaaatgattttcacataaaaa |
324 |
Q |
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| T |
55074826 |
atccaaatgattttcacataaaaa |
55074803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 50371434 - 50371493
Alignment:
| Q |
8 |
catgaagagtctatgcaaggaaggtgacaaccccttaactagttccccatatagaaatag |
67 |
Q |
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| T |
50371434 |
catgaagagtctatgcaaggaaggtgacatccacttaactagttcctcacatagaaatag |
50371493 |
T |
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