View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_low_65 (Length: 283)
Name: NF5814_low_65
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_65 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 267; Significance: 1e-149; HSPs: 13)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 9305726 - 9306000
Alignment:
| Q |
1 |
taattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9305726 |
taattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaat |
9305825 |
T |
|
| Q |
101 |
atggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgagg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
9305826 |
atggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattttgcaagatgcttatgatattgaaatgagtttgagg |
9305925 |
T |
|
| Q |
201 |
ttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctccctatgct |
275 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
9305926 |
ttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctccctatgct |
9306000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 9352254 - 9352518
Alignment:
| Q |
1 |
taattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| |||| ||||| || ||||| ||| |
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|
| T |
9352254 |
taattattaaattcatatgataatgaaatt-aataaaataaacagcacttgttagtgatggtgtagagcatgtggtgcctgcatgattt--cctttaaat |
9352350 |
T |
|
| Q |
101 |
atggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgagg |
200 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
9352351 |
atggtaagcttgttacatgttttcccaacattgtgaatatgtgaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtttgagg |
9352450 |
T |
|
| Q |
201 |
ttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctcc |
268 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9352451 |
ttcatgatgaatatagctggcatgttttcagttagaaaacctcattagtcatcaattagcttgcctcc |
9352518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 30 - 230
Target Start/End: Original strand, 9293287 - 9293487
Alignment:
| Q |
30 |
ttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaac |
129 |
Q |
| |
|
||||||||||| |||||| |||||| |||||||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||| |
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|
| T |
9293287 |
ttaataaaatagacagcagttgttaatgatggtgtagagcatgtggtgcctacatgaattgccatttgaatatggtaagcttgttacatgttagtccaac |
9293386 |
T |
|
| Q |
130 |
attgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatg-atattgaaatgagtatgaggttcatgatgaatatagctggcatgtttt |
228 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |||||| |||| |||||||||||||| |||||| ||||||||||||||||||||||| || |
|
|
| T |
9293387 |
attgtgaatttattaatgagactgcatgtgttattctgctagatgc-tatgaatattgaaatgagtttgaggtgcatgatgaatatagctggcatgtctt |
9293485 |
T |
|
| Q |
229 |
ca |
230 |
Q |
| |
|
|| |
|
|
| T |
9293486 |
ca |
9293487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 30 - 225
Target Start/End: Original strand, 9288766 - 9288961
Alignment:
| Q |
30 |
ttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaac |
129 |
Q |
| |
|
||||||||||| |||||| |||||| ||||||||||||||||||| |||||||| |||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
9288766 |
ttaataaaatagacagcagttgttaaggatggtgtagagcatgtggtgcctacataaattgccatttgaatatggtaagcttgttacatgttagtccaac |
9288865 |
T |
|
| Q |
130 |
attgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatg-atattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
225 |
Q |
| |
|
|||| ||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
9288866 |
attgagaatttattaatgatactgcatgtgttattctgcaagatgc-tatgaatattgaaatgagtttgagatgcatgatgaatatagctggcatgt |
9288961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 32 - 225
Target Start/End: Original strand, 9297896 - 9298089
Alignment:
| Q |
32 |
aataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacat |
131 |
Q |
| |
|
|||||||||| ||||| |||||| |||||||| |||||||||| | | | ||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9297896 |
aataaaatatgcagcagttgttaaggatggtgttgagcatgtggtgtcaatatggatttccctttgaatatggtaagcttgttacatgttagtccaacat |
9297995 |
T |
|
| Q |
132 |
tgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
225 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||| ||||| |
|
|
| T |
9297996 |
tgtgaatatattaatgatactgcatgtgttattctgcaagatgcttatgatattaaaatgagtttgagatgcatgatgaatatagctgccatgt |
9298089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 32 - 225
Target Start/End: Complemental strand, 9373260 - 9373067
Alignment:
| Q |
32 |
aataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacat |
131 |
Q |
| |
|
||||||||| | ||| |||||| |||||| ||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9373260 |
aataaaatagagggcagttgttaatgatggagtagagcatgtggtgcctacatgaattttcctttgaatatggtaagcttgttacatgttagtccaacat |
9373161 |
T |
|
| Q |
132 |
tgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatg-atattgaaatgagtatgaggttcatgatgaatatagctggcatgt |
225 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
9373160 |
tgtgaatttattaatgatactgcatgtgttattctgcaagatgc-catgaatattaaaatgagtttgagatgcatgatgaatatagctggcatgt |
9373067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 9302109 - 9302326
Alignment:
| Q |
1 |
taattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaat |
100 |
Q |
| |
|
||||| ||||||| |||| ||||||| || |||||||||| ||||||||||||||||||||||||||||||||| |||| || || ||||||||| ||| |
|
|
| T |
9302109 |
taattgttaaattgatataataatgaaatt-aataaaatatgcagcacttgttagtgatggtgtagagcatgtggtgcctgcagga-tttccctttaaat |
9302206 |
T |
|
| Q |
101 |
atggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgagg |
200 |
Q |
| |
|
|||||||||||||| |||| ||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9302207 |
atggtaagcttgtttgatgt-----caacattgtgaatatgtgaatgatattgcatgtgatattctgcaagatgcttatgatattgaaatgagtttgagg |
9302301 |
T |
|
| Q |
201 |
ttcatgatgaatatagctggcatgt |
225 |
Q |
| |
|
| ||||||||||||||||||||||| |
|
|
| T |
9302302 |
tgcatgatgaatatagctggcatgt |
9302326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 2 - 225
Target Start/End: Complemental strand, 9367362 - 9367149
Alignment:
| Q |
2 |
aattattaaattcatatgataatgatttttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaata |
101 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||||| ||||||||| ||||||||||||||||||||| |||| ||||| || ||||||||||| |
|
|
| T |
9367362 |
aattattaaattcatatgataatgaaatt-aataaaatatgaagcacttgtcggtgatggtgtagagcatgtggtgcctgcatga-ttcccctttgaata |
9367265 |
T |
|
| Q |
102 |
tggtaagcttgttacatgttagtccaacattgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgaggt |
201 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | ||||||| ||||||| || |||||| |||||||| |||||||| |||||| |
|
|
| T |
9367264 |
tggtaagcttgttagatgttttcccaacattgtgaatatttgaatgatatagcatgtgttaatctgca--------atgatattaaaatgagtttgaggt |
9367173 |
T |
|
| Q |
202 |
tcatgatgaatatagctggcatgt |
225 |
Q |
| |
|
|| |||||||||||||||||||| |
|
|
| T |
9367172 |
gcacgatgaatatagctggcatgt |
9367149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 33 - 268
Target Start/End: Original strand, 9332561 - 9332805
Alignment:
| Q |
33 |
ataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacatt |
132 |
Q |
| |
|
||||||||| ||| ||||||| ||||||| |||||||||||| |||| |||| ||||| ||||||||| |||| ||||||| ||||| ||| |||| |
|
|
| T |
9332561 |
ataaaatatgcagtacttgttgatgatggtttagagcatgtggtgcctgtatga-tttccttttgaatatagtaaccttgttagatgttttcccagcatt |
9332659 |
T |
|
| Q |
133 |
gtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaatgagtatgaggttcatgatgaatatagctggcatgtttt---- |
228 |
Q |
| |
|
|||||| | | |||| || ||||||| |||| ||||||||||| |||||||| |||||| | |||| | ||||||||||||||||||||||| || |
|
|
| T |
9332660 |
gtgaatatgtgaatggtatcgcatgtggtattatgcaagatgct-atgatattaaaatgaatttgagatgcatgatgaatatagctggcatgtcttccta |
9332758 |
T |
|
| Q |
229 |
-------cagttagaaaacctcattagtcatcaattagcttgcctcc |
268 |
Q |
| |
|
|| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9332759 |
gtgttggcaatcagaaaacctcattagtcatcaattagcttgcctcc |
9332805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 190
Target Start/End: Complemental strand, 9309711 - 9309552
Alignment:
| Q |
30 |
ttaataaaatatacagcacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaac |
129 |
Q |
| |
|
||||||||||| | ||||||||| | ||||| |||||||||||| |||| |||| ||||||||||||||||||||||||||| | | | ||||| |
|
|
| T |
9309711 |
ttaataaaatagttatcacttgttaatcatggtttagagcatgtggtgcctgcatggatttccctttgaatatggtaagcttgtcatacctctacccaac |
9309612 |
T |
|
| Q |
130 |
attgtgaatttattaatgatactgcatgtgatattctgcaagatgcttatgatattgaaat |
190 |
Q |
| |
|
||||||||| | ||||||||| ||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
9309611 |
attgtgaatatgttaatgatattgcatgtgatactctgcaagatgc-tctgatattgaaat |
9309552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 9348731 - 9348588
Alignment:
| Q |
46 |
cacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaa |
145 |
Q |
| |
|
||||||||| | ||||| ||||||||||| | || ||||||||||| ||||||||||||||| |||| | || | |||||||||||||| | |||| |
|
|
| T |
9348731 |
cacttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaa |
9348632 |
T |
|
| Q |
146 |
tgatactgcatgtgatattctgcaagatgcttatgatattgaaat |
190 |
Q |
| |
|
||||| ||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
9348631 |
tgatattgcatgtgatactctgcaagatgc-tatgatattgaaat |
9348588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 190
Target Start/End: Complemental strand, 9356101 - 9355958
Alignment:
| Q |
46 |
cacttgttagtgatggtgtagagcatgtggggcctacatgaatttccctttgaatatggtaagcttgttacatgttagtccaacattgtgaatttattaa |
145 |
Q |
| |
|
||||||||| | ||||| ||||||||||| | || ||||||||||| ||||||||||||||| |||| | || | |||||||||||||| | |||| |
|
|
| T |
9356101 |
cacttgttaatcatggtttagagcatgtgctggctgcatgaatttccatttgaatatggtaaggttgtcatatctctacccaacattgtgaatatgttaa |
9356002 |
T |
|
| Q |
146 |
tgatactgcatgtgatattctgcaagatgcttatgatattgaaat |
190 |
Q |
| |
|
||||| ||||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
9356001 |
tgatattgcatgtgatactctgcaagatgc-tctgatattgaaat |
9355958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 9367131 - 9367095
Alignment:
| Q |
232 |
ttagaaaacctcattagtcatcaattagcttgcctcc |
268 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||| |
|
|
| T |
9367131 |
ttagaaaacctcattagtcaccaattagcttgcctcc |
9367095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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