View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_low_7 (Length: 570)
Name: NF5814_low_7
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_7 |
 | |
|
| [»] scaffold0466 (2 HSPs) |
| | |
|
| [»] scaffold1041 (3 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 420; Significance: 0; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 78 - 562
Target Start/End: Original strand, 25358820 - 25359306
Alignment:
| Q |
78 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaagacc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
25358820 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacatctcactttccttcttcgatgaagacc |
25358919 |
T |
|
| Q |
178 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgt |
277 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
25358920 |
acatctcgactaatttatatcttgttgatgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttctagctcttgt |
25359019 |
T |
|
| Q |
278 |
cgtcaagtttggctttcttatcgtctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgttt |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25359020 |
cgtcaagtttggctttcttatcgtctaaaatatgaacatatgtga-ccctcaagtgtgatattctagaatttcttccactctatgcatcttgtgatgttt |
25359118 |
T |
|
| Q |
378 |
ttcacacaattatttttggagatctattagttaattagactacacacgccacaacttcaatcaacaattattttggtagttaattcatatcctcggtacg |
477 |
Q |
| |
|
|||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25359119 |
ttcacacactaattgttggagatctattagttaattagactacacacgccacaacttcaaccaacaattattttggtagttaattcatatcctcggtacg |
25359218 |
T |
|
| Q |
478 |
tccatatagcttttaattatctgcaagctggttctctccata----atagctttgttattcttgaaaaaataatcttatgatctctgct |
562 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25359219 |
tccatatagcttttaattatctgcaagctggttctctccataatatatagctttgttattcttgaaaaaa-aatcttatgatctctgct |
25359306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 206 - 562
Target Start/End: Original strand, 25398988 - 25399339
Alignment:
| Q |
206 |
tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgtctaa |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
25398988 |
tgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct-------gtcgtcaagtttggctttcttatcgtctaa |
25399080 |
T |
|
| Q |
306 |
aatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattatttttggagatctatt |
405 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||||||||||||| |
|
|
| T |
25399081 |
aatatgaacatatgtgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgtgatgtttttcacacactaattgttggagatctatt |
25399179 |
T |
|
| Q |
406 |
agttaattagactacacacgccacaacttcaatcaacaattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagc |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25399180 |
agttaattagactacacacgccacaacttcaaccaataattattttggtagttaattcatatcctcggtacgtccatatagcttttaattatctgcaagc |
25399279 |
T |
|
| Q |
506 |
tggttctctccata----atagctttgttattcttgaaaaaataatcttatgatctctgct |
562 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25399280 |
tggttctctccataatatatagctttgttattcttgaaaaaa-aatcttatgatctctgct |
25399339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 191 - 458
Target Start/End: Original strand, 25650704 - 25650968
Alignment:
| Q |
191 |
tttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggc |
290 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
25650704 |
tttatatcttgttgttgttcattttttaaaacatgattccctttgaactttgatgataaccaacaaagttgaatttctagct--tgtcgtcaagtttggc |
25650801 |
T |
|
| Q |
291 |
tttcttatcgtctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattat |
390 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||| |
|
|
| T |
25650802 |
tttcttatcgtccaaaatatgaacatatgcgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgcggtatttttcacacacttat |
25650900 |
T |
|
| Q |
391 |
ttttggagatctattagttaattagactacacacgccacaacttcaatcaacaattattttggtagtt |
458 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25650901 |
tgttggagatctattagttaattagactacacacgccacaacttcaacccacaattattttggtagtt |
25650968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 217 - 458
Target Start/End: Original strand, 25618003 - 25618243
Alignment:
| Q |
217 |
gacaacatgattccctttgaactttgatgataaccaacaaagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacat |
316 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25618003 |
gacaacatgattcccttagaactttgatgataaccaaaaaagttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacat |
25618102 |
T |
|
| Q |
317 |
atgtgacccctcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacacaattatttttggagatctattagttaattaga |
416 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||||||||||||||||||||| |
|
|
| T |
25618103 |
atgtgaccc-tcaagtgtgatattctagaatttcttccactctatgcatcttgtggtgtttttcacatacttattgttggagatctattagttaattaga |
25618201 |
T |
|
| Q |
417 |
ctacacacgccacaacttcaatcaacaattattttggtagtt |
458 |
Q |
| |
|
|||||||||||||||||| || | |||||||||||||||||| |
|
|
| T |
25618202 |
ctacacacgccacaacttaaacccacaattattttggtagtt |
25618243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 78 - 268
Target Start/End: Original strand, 25392139 - 25392329
Alignment:
| Q |
78 |
ttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaagacc |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392139 |
ttgttcaacttctctaaatttttcttcttcaaattctggaagaaaaccgtattccttttggtgagtaataacgtctcactctccttcttcgatgaagacc |
25392238 |
T |
|
| Q |
178 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct |
268 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25392239 |
acatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaacaaagttgaatttct |
25392329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 365 - 458
Target Start/End: Original strand, 25495042 - 25495136
Alignment:
| Q |
365 |
tcttgtggtgtttttcacacaattatttttggagatctattagttaattagactacacacgccacaacttcaa-tcaacaattattttggtagtt |
458 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
25495042 |
tcttgtggtgtttttcacacacttattgttggagatctattagttaattcgactacacacgccacaacttcaaccccacaattattttggtagtt |
25495136 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 56 - 137
Target Start/End: Original strand, 25650621 - 25650707
Alignment:
| Q |
56 |
acaattttggtaagtgtgacactt-----gttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta |
137 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25650621 |
acaattttggtaagtgtgacacttagcttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattcctttta |
25650707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 455 - 543
Target Start/End: Original strand, 25495282 - 25495366
Alignment:
| Q |
455 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaa |
543 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || |||||||||||||||||||| |
|
|
| T |
25495282 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgcaagctggttctctcgattgtacctttgttattcttgaaaaaa |
25495366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 455 - 546
Target Start/End: Original strand, 25651231 - 25651318
Alignment:
| Q |
455 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaaaaaataa |
546 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
25651231 |
agttaattcacatcttcggtacgtccatatagctttta----tctgcaagctggttctctcgatagtacctttgttattcttgaaaaaataa |
25651318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 103
Target Start/End: Original strand, 25617952 - 25617984
Alignment:
| Q |
71 |
gtgacacttgttcaacttctctaaatttttctt |
103 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
25617952 |
gtgacacttgttcaacttctctaaatttttctt |
25617984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: scaffold0466
Description:
Target: scaffold0466; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 56 - 458
Target Start/End: Complemental strand, 6619 - 6221
Alignment:
| Q |
56 |
acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctca |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6619 |
acaattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaaattcttgaaggaaaccgtattcctttgagtgagtaataacgtctcg |
6520 |
T |
|
| Q |
156 |
ctctccttcttcgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattccctttgaactttgatgataaccaaca |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
6519 |
ctctccttcttcgatgaagaccacatctcgactaatttatatcttgt---tgttcatttttgacaacatgattccctatgaactttgatgataaccaaca |
6423 |
T |
|
| Q |
256 |
aagttgaatttcttgctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtgacccctcaagtgtgatattctagaatttcttcca |
355 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
6422 |
aggttgaatttctagctcttgtcgtcaagtttggctttcttatcgtctaaaatatgaacatatgtga-ccctcaagtgtgataatctagaatttcttcca |
6324 |
T |
|
| Q |
356 |
ctctatgcatcttgtggtgtttttcacacaattatttttggagatctattagttaattagactacacacgccacaacttcaatcaacaattattttggta |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |
|
|
| T |
6323 |
ctctatgcatcttgtggtgtttttcacacacttattgttggagatctattagttaattagactacacacgccacaacttcaacccacaattattttggta |
6224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0466; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 533
Target Start/End: Complemental strand, 6070 - 5996
Alignment:
| Q |
455 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttatt |
533 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
6070 |
agttaattcatatcctcggtacgtccatatagctt----ttatctgtaagctggttctctcgattttacctttgttatt |
5996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 72; Significance: 2e-32; HSPs: 3)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 455 - 562
Target Start/End: Complemental strand, 426 - 322
Alignment:
| Q |
455 |
agttaattcatatcctcggtacgtccatatagcttttaattatctgcaagctggttctctccataatagctttgttattcttgaa-aaaataatcttatg |
553 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
426 |
agttaatccatatcctcggtacgtccatatagctttta----tctgcaagctggttctctccataatagctttgttattcttgaaaaaaaaaaacttatg |
331 |
T |
|
| Q |
554 |
atctctgct |
562 |
Q |
| |
|
||||||||| |
|
|
| T |
330 |
atctctgct |
322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 167 - 229
Target Start/End: Complemental strand, 604 - 542
Alignment:
| Q |
167 |
cgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
604 |
cgatgaagaccacatctcgactaatttatatcttgttgttgttcatttttgacaacatgattc |
542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 656 - 605
Alignment:
| Q |
58 |
aattttggtaagtgtgacacttgttcaacttctctaaatttttcttcttcaa |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
656 |
aattttggtaagcgtgacacttgttcaacttctctaaatttttcttcttcaa |
605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 192
Target Start/End: Complemental strand, 32973838 - 32973722
Alignment:
| Q |
76 |
acttgttcaacttctctaaatttttcttcttcaaattctggaaggaaaccgtattccttttagtgagtaataacgtctcactctccttcttcgatgaaga |
175 |
Q |
| |
|
||||||| ||| |||||| || ||||||||||||||| ||||| |||| ||||||||||| |||||| ||| || || | |||||||||| |||| |
|
|
| T |
32973838 |
acttgttgaacgtctctagatgtttcttcttcaaattatggaaagaaattgtattcctttttgtgagttctaaattcccattttccttcttcgtcaaaga |
32973739 |
T |
|
| Q |
176 |
ccacatctcgactaatt |
192 |
Q |
| |
|
| |||||||| |||||| |
|
|
| T |
32973738 |
caacatctcgtctaatt |
32973722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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