View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_70 (Length: 255)
Name: NF5814_low_70
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_70 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 39674776 - 39674531
Alignment:
| Q |
1 |
agaaaggaaagatcaccaatgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatattcagaagcac |
100 |
Q |
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| T |
39674776 |
agaaaggaaagatcaccaacgataatgccattgtctcaatctcaaagggatttagctacacacacaatgttagaatcctcacaggaatattcagaagcac |
39674677 |
T |
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| Q |
101 |
ttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataagccagcgatgatggattt |
200 |
Q |
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| T |
39674676 |
ttttaatgggtgatttgatcaatcactataatatcggtggattagcttgaacagaagccccaagaaaatttctcgtgaataagccagcaatgatggattt |
39674577 |
T |
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| Q |
201 |
ggttccattgtgctgctttcatattcaaatgggtgttgctcctttg |
246 |
Q |
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| T |
39674576 |
ggttccattgtgctgctttcatattcaaatgggtgttgctcctttg |
39674531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 19968417 - 19968507
Alignment:
| Q |
93 |
agaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacagaagccccaagaaaatttctcgtgaataag |
183 |
Q |
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| T |
19968417 |
agaagcacttctaatgagtgatttgaattatcactataatattggttgtatagttttaacaaaagcttcaagaaaatttctcgcgaataag |
19968507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 53 - 182
Target Start/End: Complemental strand, 34626301 - 34626172
Alignment:
| Q |
53 |
tagctacacacacaatgttagaatcctcacaggaatattcagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaac |
152 |
Q |
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| T |
34626301 |
tagctacacacacaatgctagaatcctcacatgactactcagaatcccttctaatgagtgatttgattaatcactataatattggtggattagctttaac |
34626202 |
T |
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| Q |
153 |
agaagccccaagaaaatttctcgtgaataa |
182 |
Q |
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| T |
34626201 |
agaagcttcaagaatatttcttatgaataa |
34626172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 91 - 154
Target Start/End: Complemental strand, 40037588 - 40037525
Alignment:
| Q |
91 |
tcagaagcacttttaatgagtgatttgatcaatcactataatatcggtggattagctttaacag |
154 |
Q |
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| T |
40037588 |
tcagaagcatttctaatgagcgatttgaattatcactataatattggtggtttagctttaacag |
40037525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 51044880 - 51044923
Alignment:
| Q |
66 |
aatgttagaatcctcacaggaatattcagaagcacttttaatga |
109 |
Q |
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|||| ||||||||||||| |||||||||||||||||| |||||| |
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| T |
51044880 |
aatgctagaatcctcacatgaatattcagaagcacttctaatga |
51044923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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