View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_71 (Length: 252)
Name: NF5814_low_71
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_71 |
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Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 42 - 202
Target Start/End: Original strand, 1952470 - 1952630
Alignment:
| Q |
42 |
ccatactagagagtcataatacttacatttatttacttaactacctataagaaagaaacattatttgagtaaaaaggatgtaatgcgtgccaattgcatg |
141 |
Q |
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| T |
1952470 |
ccatactagaaagtcataatatttacatttatttacttaactactcataagaaagaaacattatttgagtgaaaaggatgtaatgcgtgccaattgcatg |
1952569 |
T |
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| Q |
142 |
agctaaaacagaaaatacggacttaactgttagatctgattattaaacccttaccttttag |
202 |
Q |
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| T |
1952570 |
agctaaaacagaaaatacggacttagctgttagatctgattattaaacccttaccttttag |
1952630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 113 - 202
Target Start/End: Original strand, 1995773 - 1995862
Alignment:
| Q |
113 |
aaaaggatgtaatgcgtgccaattgcatgagctaaaacagaaaatacggacttaactgttagatctgattattaaacccttaccttttag |
202 |
Q |
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| T |
1995773 |
aaaaggatgtaatgtgtgccaattgcatgagctaaaacagaaaatacagacttagttgttacatctgattactaaaccctttccatttag |
1995862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 1952651 - 1952694
Alignment:
| Q |
199 |
ttagcaaaatacatcctcgattatccaagaaacacaacttcatc |
242 |
Q |
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| T |
1952651 |
ttagcaaaatacatcctccattattcaagaaacacaacttcatc |
1952694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 44 - 85
Target Start/End: Original strand, 1995446 - 1995487
Alignment:
| Q |
44 |
atactagagagtcataatacttacatttatttacttaactac |
85 |
Q |
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| T |
1995446 |
atactagaaagtcataatactaccatttatttacttaactac |
1995487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12546722 - 12546682
Alignment:
| Q |
1 |
tgacataaaagggaatttaattcttgtctttatttctatca |
41 |
Q |
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| T |
12546722 |
tgacataaaagggaatttaattcttgcctttatttctatca |
12546682 |
T |
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