View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_77 (Length: 250)
Name: NF5814_low_77
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_77 |
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Alignment Details
Target: chr7 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 118
Target Start/End: Original strand, 46912195 - 46912297
Alignment:
| Q |
16 |
atgcacacacagattacaaaagtataaaaacagagagttttttaaaatttaaaataggaaactagctaggtgcagaacagaaaattataacacttccaac |
115 |
Q |
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| T |
46912195 |
atgcacacacagattacaaaagtataaaaacagagagttttttaaaatttaaaataggaaactagctaggtgcagaacagaaaattataacacttccaac |
46912294 |
T |
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| Q |
116 |
ttt |
118 |
Q |
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||| |
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| T |
46912295 |
ttt |
46912297 |
T |
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Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 46912344 - 46912429
Alignment:
| Q |
165 |
tgctgcccctacccataaatgaacccttctactactagctaaaaaccgggataaacaaatttctaaaaaattatagcaatgaacat |
250 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46912344 |
tgctgcccctacccataaatgaacccttccactactagctaaaaaccgggataaacaaatttctaaaaaattatagcaatgaacat |
46912429 |
T |
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