View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5814_low_8 (Length: 557)
Name: NF5814_low_8
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 539
Target Start/End: Complemental strand, 35863597 - 35863071
Alignment:
| Q |
13 |
aatatttccaggaggaggggacaattcatattccgtgaggacagcatctgaacatggccattcctcacattcagacttggaaggaggaaggtgatacaac |
112 |
Q |
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| T |
35863597 |
aatatttccaggaggaggggacaattcatattccgtgaggacagcatctgaacatggccattcctcacattcagacttggaaggaggaaggtgatacaac |
35863498 |
T |
|
| Q |
113 |
agtttaaatttgccacttacagaatccagttaaatgaccatttcattaattcatatctggcttattgaatagagattaaaatcttggtcttgttaaaaag |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35863497 |
agtttaaatttgccacttacagaatccagttaaatgaccatttcattaattcatatctggcttattgaatagagattaaaatcttggtcttgttaaaaag |
35863398 |
T |
|
| Q |
213 |
gtttatcaatgattgatgcttgaaaactattaatattaacagagacacaaagagaaagcgttcatcatccagaaagagtagtggagggcttcatggctta |
312 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
35863397 |
gtttaataatgattgatgcttgaaaactattaatattaacagagacacaaagagaaagcgttcatcatccagaaagagtggtggagggcttcatggctta |
35863298 |
T |
|
| Q |
313 |
cctgagaatgaaaagttcaatagattgtctgactttgctccaacacctgatcaaggtacattacttgttaaggcttcagactagtattgatattctttat |
412 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35863297 |
cctgagaatgaaaagttcaataggttgtctgactttgctccaacacctgatcaaggtacattacttgttaaggcttcagactagtattgatattctttat |
35863198 |
T |
|
| Q |
413 |
ccacttaacacatatctgagccttgtaggttgcttttcagaacttcttgtggagacaggtcccactccaacacaaggaaaccccaatcagtctagtgaca |
512 |
Q |
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| T |
35863197 |
ccacttaacacatatctgagccttgtaggtttcttttcagaacttcttgtggagacaggtcccactccaacacaaggaaaccccaatcattctagtgaca |
35863098 |
T |
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| Q |
513 |
agataaccgaatcaatccaagcgtatg |
539 |
Q |
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| T |
35863097 |
agataaccaaatcaatccaagcgtatg |
35863071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 351 - 539
Target Start/End: Complemental strand, 34812818 - 34812629
Alignment:
| Q |
351 |
tccaacacctgatcaaggtacattacttgttaaggcttc-agactagtattgatattctttatccacttaacacatatctgagccttgtaggttgctttt |
449 |
Q |
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||||||||||||||||||||||||||||||||| ||||| | || || |||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
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| T |
34812818 |
tccaacacctgatcaaggtacattacttgttaatgcttctataccagcattgatattctttatccacttaacacatatctgagccttgtaagttcctttt |
34812719 |
T |
|
| Q |
450 |
cagaacttcttgtggagacaggtcccactccaacacaaggaaaccccaatcagtctagtgacaagataaccgaatcaatccaagcgtatg |
539 |
Q |
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| T |
34812718 |
cagtacttcttgtggagacaggtcccacgcaaacacaaggaaatcccaatcatcctagtgacaagataaccgaatcaatccatgcgtatg |
34812629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 34813160 - 34812901
Alignment:
| Q |
15 |
tatttccaggaggaggggacaattcatattccgtgaggacagcatctgaacatggccattcctcacattcagacttggaaggaggaaggtgatacaacag |
114 |
Q |
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|||||||| ||||||| ||||| ||||||||||| | ||||||||||| ||||| | |||||||||||||||||||||| |||||||| |||||| | |
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| T |
34813160 |
tatttccaagaggaggagacaacacatattccgtgggtacagcatctgatcatggtccttcctcacattcagacttggaaacaggaaggtaatacaataa |
34813061 |
T |
|
| Q |
115 |
tttaaatttgccacttacagaatccagttaaatgaccatttcattaattcatatctggcttattgaatagagattaaaatcttggtcttgttaaaaaggt |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||| ||| ||| ||| ||| | ||| | ||| ||||| |||||| |||||||| | |
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| T |
34813060 |
tttaaatttgccacttacagaatccagttaaatgaccataccatatattgataactgacttgtcaaattgcgatgaaaattctggtctagttaaaaaagc |
34812961 |
T |
|
| Q |
215 |
ttatcaatgattgatgcttgaaaactattaatattaacagagacacaaagagaaagcgtt |
274 |
Q |
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|| || |||||||||| |||||||||||||||||||||||| ||||||| |||||||| |
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| T |
34812960 |
ttgtcgatgattgatgtttgaaaactattaatattaacagattaacaaagaaaaagcgtt |
34812901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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