View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5814_low_84 (Length: 246)
Name: NF5814_low_84
Description: NF5814
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5814_low_84 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 2e-95; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12546713 - 12546941
Alignment:
| Q |
1 |
ttttatgtcaggaaaagtctgtgagaaagagagagtattgagataatgannnnnnncctttattcattcacttttcctgctcttatagacaggatagcaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12546713 |
ttttatgtcagggaaagtctgtgaggaagagagagtattgagataatgattttctgcctt-attcattcacttttcctgctcttatagacaggatagcaa |
12546811 |
T |
|
| Q |
101 |
tacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaat-aaaagataaattctaaatacttttattcttatcccttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12546812 |
tacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttt |
12546911 |
T |
|
| Q |
200 |
taaggttctaacagtagagagtggcaactt |
229 |
Q |
| |
|
|||||||||||| |||||||||| |||||| |
|
|
| T |
12546912 |
taaggttctaacggtagagagtgacaactt |
12546941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 12143720 - 12143929
Alignment:
| Q |
1 |
ttttatgtcaggaaaagtctgtgagaaagagagagtattgagataatgannnnnnncctttattcattcacttttcctgctcttatagacaggatagcaa |
100 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12143720 |
ttttatgtcagggaaagtctgtgaggaagagagagtattgagataatgattttctgcctt-attcattcacttttcctgctcttatagacaggatagcaa |
12143818 |
T |
|
| Q |
101 |
tacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaat-aaaagataaattctaaatacttttattcttatcccttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12143819 |
tacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaataaaaagataaattctaaatacttttattcttatcccttt |
12143918 |
T |
|
| Q |
200 |
taaggttctaa |
210 |
Q |
| |
|
||||||||||| |
|
|
| T |
12143919 |
taaggttctaa |
12143929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 12143929 - 12144072
Alignment:
| Q |
87 |
agacaggatagcaatacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaat-aaaagataaattctaaatactttt |
185 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12143929 |
agacaggatagcaatacaattgttcctaatagttaggatctagagacacttgtcctcatcacaatacaagaaaataaaaagataaattctaaatactttt |
12144028 |
T |
|
| Q |
186 |
attcttatcccttttaaggttctaacagtagagagtggcaactt |
229 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||| |||||| |
|
|
| T |
12144029 |
attcttatcccttttaaggttctaacggtagagagtgacaactt |
12144072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University