View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5815-Insertion-1 (Length: 465)
Name: NF5815-Insertion-1
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5815-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 8 - 465
Target Start/End: Original strand, 32876141 - 32876598
Alignment:
| Q |
8 |
acatccaacctaactatttcagttgagctaggttttatagagccnnnnnnnataaagaaaaagatattaacaatcaagtccatgtacaagacgaacatgg |
107 |
Q |
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| T |
32876141 |
acatccaacctaactatttcagttgagctaggttttatagagccttttcttataaagaaaaagatattaacaatcaagtccatgtacaagacgaacatgg |
32876240 |
T |
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| Q |
108 |
accgacaatcaaaaaccacaaatcaaaggaatcgtattatacacgtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattga |
207 |
Q |
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| T |
32876241 |
accgacaaacaaaaaccacaagttaaaggaatcgtattatataggtggaacatccaaaatgaaatcataacaacactaatacaaacatcacttaaattga |
32876340 |
T |
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| Q |
208 |
gaattaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctataga |
307 |
Q |
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| T |
32876341 |
gaattaccaccaataccaataagaaacctaactaccaaaatcaaaggcaatacctaaaaacaaacccaaactcccacacttcctcatgagtggctataga |
32876440 |
T |
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| Q |
308 |
aacaaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagccca |
407 |
Q |
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| T |
32876441 |
aacaaaattcaatcacctatcgaatgctaccataacccctccaataaaataaaacccttgaaaacagaagcttaacttcgcatcaccacaactaagccca |
32876540 |
T |
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| Q |
408 |
attaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcgt |
465 |
Q |
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| T |
32876541 |
attaaacactagaccaatgacttattccaacacgctttcagattccaccaccgctcgt |
32876598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 174 - 245
Target Start/End: Complemental strand, 27044096 - 27044025
Alignment:
| Q |
174 |
ataacaacactaatacaaacatcacttaaattgagaattaccaccaataccaataagaaacctaactaccaa |
245 |
Q |
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| T |
27044096 |
ataataacagtaattcaaacaccacctaaattgagagctaccaccaaccccaataagaaacctaactaccaa |
27044025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 389 - 464
Target Start/End: Original strand, 15676745 - 15676820
Alignment:
| Q |
389 |
atcaccacaactaagcccaattaaataccagaccaatgacttattccaacacgctttcagattccaccaccgctcg |
464 |
Q |
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| T |
15676745 |
atcaccataaatgagcccaattaaatatctgaacaatgacttattccaacattctttcatattccaccaccactcg |
15676820 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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