View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5815-Insertion-2 (Length: 451)
Name: NF5815-Insertion-2
Description: NF5815
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5815-Insertion-2 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 397; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 41459315 - 41459757
Alignment:
| Q |
9 |
acatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
108 |
Q |
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| T |
41459315 |
acatattcctgtatttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggtccaacaggtgacaaaagtcacatcttcacca |
41459414 |
T |
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| Q |
109 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
208 |
Q |
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| T |
41459415 |
acacgttagtaggaaataatggatatgcagctcctgaatatgtagattcaggtattttccggttcatgttcccgaaccatatttttgtttcgcgtttctc |
41459514 |
T |
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| Q |
209 |
cttttctgannnnnnnatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaannnnnnncgagatt |
308 |
Q |
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| T |
41459515 |
cttttctgatttttttatgttattctagattcagcttagttgtcttgcttaagactaatttatctttattctttgcgagccttgaatttttttcgagatt |
41459614 |
T |
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| Q |
309 |
aaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtagg |
408 |
Q |
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| T |
41459615 |
aaggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtagg |
41459714 |
T |
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| Q |
409 |
agggtaattgacaataataaaccatatggagaacacaacttgg |
451 |
Q |
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| T |
41459715 |
agggtaattgacaataataaaccatatggagaacacaacttgg |
41459757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 313 - 422
Target Start/End: Original strand, 41449177 - 41449286
Alignment:
| Q |
313 |
ttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
412 |
Q |
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| T |
41449177 |
ttaatagctaaaaacattgttactgtaggtcatcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggaggg |
41449276 |
T |
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| Q |
413 |
taattgacaa |
422 |
Q |
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| T |
41449277 |
taattgacaa |
41449286 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 311 - 451
Target Start/End: Original strand, 41442728 - 41442868
Alignment:
| Q |
311 |
ggttaatagctaaaaacattgttactgtaggtcttcttactacgaagagtgatgtctatagttttggagttgtcctgcttgaaatggtatgtggtaggag |
410 |
Q |
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| T |
41442728 |
ggttaatagctgaaaacattgtgactgtaggtcatcttactactaagagcgatgtctatagttttggagttgtcctgcttgaaatgttatccggtaagag |
41442827 |
T |
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| Q |
411 |
ggtaattgacaataataaaccatatggagaacacaacttgg |
451 |
Q |
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| T |
41442828 |
ggcagttgacaagaatagaccatctggacaacacagcttgg |
41442868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 21 - 166
Target Start/End: Original strand, 41442537 - 41442679
Alignment:
| Q |
21 |
atttggttgcaggattataatgcaaagctttctgattttgggctggcaagggatggttcaacaggtgacaaaagtcacatcttcaccaacacgttagtag |
120 |
Q |
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| T |
41442537 |
atttgattgcaggattataatgcaaagctttctgatttcgggctggcaaaggatggtccaacaggtgacaaaagccacgtct---ccaccagggtaatgg |
41442633 |
T |
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| Q |
121 |
gaaataatggatatgcagctcctgaatatgtagattcaggtatttt |
166 |
Q |
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| T |
41442634 |
gaacctatggatatgcagctcctgaatatctagctacaggtatttt |
41442679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 41448986 - 41449032
Alignment:
| Q |
62 |
gctggcaagggatggttcaacaggtgacaaaagtcacatcttcacca |
108 |
Q |
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| T |
41448986 |
gctggcaagggatggtccaacaggtgagaaaagtcacgtctccacca |
41449032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 355 - 383
Target Start/End: Original strand, 23833135 - 23833163
Alignment:
| Q |
355 |
aagagtgatgtctatagttttggagttgt |
383 |
Q |
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| T |
23833135 |
aagagtgatgtctatagttttggagttgt |
23833163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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