View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5816_high_2 (Length: 359)

Name: NF5816_high_2
Description: NF5816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5816_high_2
NF5816_high_2
[»] chr2 (3 HSPs)
chr2 (241-289)||(17616578-17616626)
chr2 (58-127)||(7501378-7501446)
chr2 (240-284)||(17698334-17698378)
[»] chr8 (1 HSPs)
chr8 (61-127)||(24279642-24279707)
[»] chr4 (1 HSPs)
chr4 (258-331)||(23056985-23057059)
[»] chr1 (3 HSPs)
chr1 (61-127)||(37701557-37701622)
chr1 (61-127)||(37683895-37683960)
chr1 (268-326)||(38336811-38336869)
[»] chr6 (1 HSPs)
chr6 (58-126)||(21528877-21528944)
[»] chr3 (1 HSPs)
chr3 (58-126)||(51229546-51229613)
[»] chr7 (1 HSPs)
chr7 (72-126)||(43779796-43779849)
[»] chr5 (1 HSPs)
chr5 (62-127)||(23023852-23023916)


Alignment Details
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 17616626 - 17616578
Alignment:
Q  241 acggcagggtcgtggtcggatggacgaatttgagtagatccggtggtgg 289  Q
    |||||||||||||||| ||||||||| |||||||||||||||| |||||    
T  17616626 acggcagggtcgtggttggatggacggatttgagtagatccggcggtgg 17616578  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 127
Target Start/End: Complemental strand, 7501446 - 7501378
Alignment:
Q  58 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 127  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| ||||||||||||||||||||    
T  7501446 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatgc 7501378  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 17698378 - 17698334
Alignment:
Q  240 gacggcagggtcgtggtcggatggacgaatttgagtagatccggt 284  Q
    ||||||||||||||||| |||  |||| |||||||||||||||||    
T  17698378 gacggcagggtcgtggtaggagagacggatttgagtagatccggt 17698334  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 24279642 - 24279707
Alignment:
Q  61 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 127  Q
    |||||||||||||||||||||||| |||   ||||||  || |||||||||||||||||||||||||    
T  24279642 aaccaatgactcagtgacccagtaacctcg-tcaagtcaatgaccgatccgagttttaaaactatgc 24279707  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 258 - 331
Target Start/End: Original strand, 23056985 - 23057059
Alignment:
Q  258 ggatggacgaatttgagtagatccggtggt-ggggtgaacggcggtggtgagatggaggatgggtgatggtggtg 331  Q
    |||||||  ||||||||||||||||||||| |||||||||| ||||||||||  | |||||| |||||| |||||    
T  23056985 ggatggaaaaatttgagtagatccggtggtgggggtgaacgacggtggtgaggagaaggatgagtgatgatggtg 23057059  T

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Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 37701557 - 37701622
Alignment:
Q  61 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 127  Q
    |||||||||||||||||| |||||||| |||   |||||||||||  ||||||||||||||||||||    
T  37701557 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcaccagtccgagttttaaaactatgc 37701622  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 127
Target Start/End: Complemental strand, 37683960 - 37683895
Alignment:
Q  61 aaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 127  Q
    |||||||||||||||||| |||||||| |||   ||||||||||   ||||||||||||||||||||    
T  37683960 aaccaatgactcagtgacgcagtaccc-ttactgagttgatcactagtccgagttttaaaactatgc 37683895  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 38336869 - 38336811
Alignment:
Q  268 atttgagtagatccggtggtggggtgaacggcggtggtgagatggaggatgggtgatgg 326  Q
    |||||||||| | || ||||||||||||||||||||||||   | ||||||||||||||    
T  38336869 atttgagtagtttcgatggtggggtgaacggcggtggtgaagagaaggatgggtgatgg 38336811  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 21528877 - 21528944
Alignment:
Q  58 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 126  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  21528877 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 21528944  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 51229546 - 51229613
Alignment:
Q  58 ttgaaccaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 126  Q
    ||||||||||||| | |||||||||||||||  | | ||| |||||||| |||||||||||||||||||    
T  51229546 ttgaaccaatgaccctgtgacccagtaccctg-accgagtcgatcaccggtccgagttttaaaactatg 51229613  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 43779796 - 43779849
Alignment:
Q  72 cagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatg 126  Q
    |||||||||| ||||||| | | ||| ||||||||||||||||||||||||||||    
T  43779796 cagtgacccaataccctt-accgagtcgatcaccgatccgagttttaaaactatg 43779849  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 23023916 - 23023852
Alignment:
Q  62 accaatgactcagtgacccagtaccctttatcaagttgatcaccgatccgagttttaaaactatgc 127  Q
    ||||||||| ||||||| |||||||||| | | ||| |||||||| | ||||||||||||||||||    
T  23023916 accaatgacccagtgactcagtaccctt-accgagtcgatcaccggttcgagttttaaaactatgc 23023852  T

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