View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5816_high_4 (Length: 251)
Name: NF5816_high_4
Description: NF5816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5816_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 7047050 - 7046821
Alignment:
| Q |
12 |
atgaactaacataaacattcaaaatcatttttatcaaagtttcaaaagatggggggtaaaaataaatgcattggagtatagaaagcaattacgggtcctt |
111 |
Q |
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| T |
7047050 |
atgaactaacataaacattcaaaatcatttttatcaaagtttcaaa-gatggggg-taaaaataaatgcattggagtatagaaagcaattacgggtcctt |
7046953 |
T |
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| Q |
112 |
ttgggcttgtttgcaagtcttctagaaaaacaatctagccaatcgcggacgtgccacgtggatctagctctcgtcctgttcgttccccaattttccgtcc |
211 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7046952 |
ttgggcttgtttgcaagtcttctagaaaaacaatcgagccaattgcggacgtgccacgtggatctagctctcgtcctgttcgttccccaattttccgtcc |
7046853 |
T |
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| Q |
212 |
aagttcattttcaccgccaaaatcttgtcttg |
243 |
Q |
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||||||||| ||| | |||||||||||||||| |
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| T |
7046852 |
aagttcattctcaaccccaaaatcttgtcttg |
7046821 |
T |
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