View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5816_low_1 (Length: 574)
Name: NF5816_low_1
Description: NF5816
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5816_low_1 |
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| [»] scaffold0449 (1 HSPs) |
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| [»] scaffold0566 (1 HSPs) |
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Alignment Details
Target: scaffold0449 (Bit Score: 503; Significance: 0; HSPs: 1)
Name: scaffold0449
Description:
Target: scaffold0449; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 1 - 557
Target Start/End: Original strand, 2359 - 2914
Alignment:
| Q |
1 |
tagtcacgatcatcatcggttagaaaatcaaacaagttagttagcgccaaattttcaagaactatctttctccccaaagacagttctgctaaaaaatggc |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2359 |
tagtcacgatcattatcggttagaaaatcaaacaagttagttagcgccaaattttcaagaactatctttctctccaaagacagttctgctaaaaaatggc |
2458 |
T |
|
| Q |
101 |
caacaatggagctatggttcatggggctcttgcgtatgcttctgcacctatttagatcaaatagcctcgagccaggatagctcacgcttattacgagcag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2459 |
caacaatggagctatggttcatggggctcttgcgtatgcttctgcacctatttagatcaaatagcctcgagccaggatagctcacgcttattacgagcag |
2558 |
T |
|
| Q |
201 |
gtctttgcagctcagcatatagctactagggtcacagtcagcaaactctcttccatatggggccacgttctagtgtcagcctagcttccatagctatgag |
300 |
Q |
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| T |
2559 |
gtctttgcagctcagcatatagctactagggtcatagtcagcaaa--ctcttccatatggggccacgttctagtgtcagcctagcttccatagctatgag |
2656 |
T |
|
| Q |
301 |
gattgca-ggaacgtccttgtcacggactcacgtaacagtccatctgcgtaagctttcttgcttgtttcttcaatgcgtttttctggatatcttgttttg |
399 |
Q |
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||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2657 |
gattgcagggaacgtccttgtcacggactcatgtaacagtccacctgcgtaagctttcttgcttgtttcttcaatgcgtttttctggatatcttgttttg |
2756 |
T |
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| Q |
400 |
ggtttaatggttggttcaagaattgatttatgagtttttggatttatcttcaatgcgtttttgtgcatgtattggatggagaggaccttgtatgagattg |
499 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
2757 |
ggtttaatggttggttcaagaattgatttatgagtttttggatttatcttcaatgtgtttttgtgcatatattggatggagaggaccttgtatgagattg |
2856 |
T |
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| Q |
500 |
ctctccgttacttattgacaacgttacgaagaatagattatatccgcattatgcaaag |
557 |
Q |
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| T |
2857 |
ctctccgttacttattgacaatgttacgaagaatagattatatcggcattatgcaaag |
2914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 50 - 347
Target Start/End: Original strand, 11086357 - 11086657
Alignment:
| Q |
50 |
aattttcaagaactatctttctccccaaagacag-ttctgctaaaaaatggccaacaatggagctatggttcatggggctcttgcgtatgcttctgcacc |
148 |
Q |
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||||||||||||| ||||||||| | ||||| | |||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||| |
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| T |
11086357 |
aattttcaagaaccatctttctctctaaagattggttctgctaaaaaatggtcaacaatggagccatggttcatagggctcttgcttatgcttctgcacc |
11086456 |
T |
|
| Q |
149 |
tatttagatcaaatagcctcgagccaggatagctcacgcttattacgagcaggtctttgcagctcagcatatagctactagggtcacagtcagcaaactc |
248 |
Q |
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||||| |||| |||| |||||||| ||||| || | ||||||||||||||||| ||||||||||| ||| ||||||||||||| || ||||| || | |
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| T |
11086457 |
tattttgatccaatatcctcgagctaggattgcccgtgcttattacgagcaggtttttgcagctcatcatgtagctactagggttaccatcagcgaa--c |
11086554 |
T |
|
| Q |
249 |
tcttccatatggggccacgttctagtgtcagcctagcttccatagctatgaggattgcagg----aacgtccttgtcacggactcacgtaacagtccatc |
344 |
Q |
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|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| || || |||||| |||| ||||||||||| ||||||| |
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| T |
11086555 |
tcttccatatggggccacgttctagtgtcagccttgcttcaatagctatgaggattgcggggcataatgtccttatcacagactcacgtaaaggtccatc |
11086654 |
T |
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| Q |
345 |
tgc |
347 |
Q |
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||| |
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| T |
11086655 |
tgc |
11086657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0566 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0566
Description:
Target: scaffold0566; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 500
Target Start/End: Complemental strand, 4117 - 4086
Alignment:
| Q |
469 |
tattggatggagaggaccttgtatgagattgc |
500 |
Q |
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| T |
4117 |
tattggatggagaggaccttgtatgagattgc |
4086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 469 - 501
Target Start/End: Original strand, 12158301 - 12158333
Alignment:
| Q |
469 |
tattggatggagaggaccttgtatgagattgct |
501 |
Q |
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| T |
12158301 |
tattggatggagaggacattgtatgagattgct |
12158333 |
T |
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