View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5817-Insertion-1 (Length: 1004)
Name: NF5817-Insertion-1
Description: NF5817
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5817-Insertion-1 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0039 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 900; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 900; E-Value: 0
Query Start/End: Original strand, 8 - 1004
Target Start/End: Original strand, 45845210 - 45846204
Alignment:
| Q |
8 |
aaacatcacttgtttttgttgcttctccaattccagttaatttcttagctcttagtgcttcacaatcccaatctgtttgactcaaaacaaccaacatagt |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845210 |
aaacatcacttgtttttgttgcttctccaattccagttaatttcttagctcttagtgcttcacaatcccaatctgtttgactcaaaacaaccaacatagt |
45845309 |
T |
|
| Q |
108 |
cacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaaca |
207 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845310 |
cacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaaca |
45845409 |
T |
|
| Q |
208 |
atgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcac |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845410 |
atgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcac |
45845509 |
T |
|
| Q |
308 |
atagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaac |
407 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845510 |
atagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaac |
45845609 |
T |
|
| Q |
408 |
caaagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactcta |
507 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845610 |
caaagcaaacacacctaaaatgaagctacaagtgagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactcta |
45845709 |
T |
|
| Q |
508 |
gtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatca |
607 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845710 |
gtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatca |
45845809 |
T |
|
| Q |
608 |
acaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgttt |
707 |
Q |
| |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845810 |
acaaaccacataacaaaatcatgatttcataccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgttt |
45845909 |
T |
|
| Q |
708 |
gaaacattgtgatgaaaaaccaccccatgttttcttgtgtgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacacc |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45845910 |
gaaacattgtgatgaaaaaccaccccatgttttcttgtgcgtgccagagaaaactatgtaaagtatcaaagatgcaacaaggttgaaatttgtccacacc |
45846009 |
T |
|
| Q |
808 |
ccacttaaagctacacctttgattcccatattgaggtgagaaacaggaaaatagtttatgggaatgtgaagaaaaattgcttaaagtagccacaaagttg |
907 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||| || |
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| T |
45846010 |
ccacttaaagctacacctttgattcccatattgaggtgagaaacaagaaaatagtttatgggaatgtgaagaaaaattgc-taaagtag-cacaaag-tg |
45846106 |
T |
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| Q |
908 |
tgaga-gcagagtaatgggattggcttctaaaggtaaattctt-aagggtgtaaaacgaattgtgctatgagatcagg-atggaatatagaggatagatt |
1004 |
Q |
| |
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||||| |||||||||| |||||||||||| ||||||||||||| |||||||||||| ||||||||| ||||||||| |||||||||||| |||||||| |
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| T |
45846107 |
tgagaggcagagtaat-ggattggcttct-aaggtaaattcttaaagggtgtaaaaacgattgtgctaagagatcaggaatggaatatagaagatagatt |
45846204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039 (Bit Score: 83; Significance: 8e-39; HSPs: 2)
Name: scaffold0039
Description:
Target: scaffold0039; HSP #1
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 93 - 519
Target Start/End: Complemental strand, 24822 - 24396
Alignment:
| Q |
93 |
aacaaccaacatagtcacagcacaagttccctgagccacaagcaacccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgcc |
192 |
Q |
| |
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||||| ||||||||| | |||||| | ||||||||| |||| || |||| ||| | ||||||||||||| | ||| ||||||| |||||||||| | |
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| T |
24822 |
aacaatcaacatagtaagagcacatgatccctgagcagcaagtaaaccaagccaaagaccttgaaaatcataaccaccataaaatgctaaccaaaccgaa |
24723 |
T |
|
| Q |
193 |
actggcattccaacaatgtaaaaacaaccaaaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggac |
292 |
Q |
| |
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|| |||||||| || | ||||||||||| || |||||||| ||||| ||||||||||||||||||||||| | || ||||| ||||||||||| |||| |
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| T |
24722 |
accggcattccgacgagataaaaacaacctaagttgatattagcaccaactttaggccttgctgttcctctaagaacaccacagcctgttgtttgaggac |
24623 |
T |
|
| Q |
293 |
aatttccaagttcacatagccctattaaaggtaacactaaagatgtaatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaac |
392 |
Q |
| |
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| || || |||||||||| ||||| | || || || | ||||| | || || |||||||||| |||||||| |||||||| |||||||| || |
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| T |
24622 |
agttacctagttcacataaacctataattggcaaaaccattgatgttaaagcaatgatttctttgtcttttgtgaacatactagcccacatgtttcttac |
24523 |
T |
|
| Q |
393 |
cattacagcaaaaaccaaagcaaacacacctaaaatgaagctacaagagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagt |
492 |
Q |
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| || |||| || |||||||| || |||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||| | |
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| T |
24522 |
acaaagagtgaaaataaatgcaaacactccacaaatgaagctgaaagaaagtcctgaaattgctgaaagttttgcttttgatggcttttgtgcacctatc |
24423 |
T |
|
| Q |
493 |
ttgttaccaactctagtggaaacacta |
519 |
Q |
| |
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||||||||||||| || ||||||||| |
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| T |
24422 |
atgttaccaactcttgttgaaacacta |
24396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0039; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 772 - 880
Target Start/End: Complemental strand, 24143 - 24035
Alignment:
| Q |
772 |
atcaaagatgcaacaaggttgaaatttgtccacaccccacttaaagctacacctttgattcccatattgaggtgagaaacaggaaaatagtttatgggaa |
871 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |||||||||||||| || ||||| || |||| ||| || | |||| ||||||| ||||| || | |
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| T |
24143 |
atcaaagaagcaacaaggttgaaatttgtccataccccacttaaagcaactccttttatacccaaattaagatatataacaagaaaataatttattggta |
24044 |
T |
|
| Q |
872 |
tgtgaagaa |
880 |
Q |
| |
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||||||||| |
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| T |
24043 |
tgtgaagaa |
24035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 139 - 755
Target Start/End: Complemental strand, 2990912 - 2990296
Alignment:
| Q |
139 |
ccaatccacaaaccttgaaaatcaaacccaacataaaaagctaaccaaattgccactggcattccaacaatgtaaaaacaaccaaaattgatatttgcac |
238 |
Q |
| |
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|||| ||||||||||| |||||||| ||| || | ||| ||||||| ||| || |||||||| |||| ||||||||||| ||||| |||||||| | |
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| T |
2990912 |
ccaaaccacaaacctttgaaatcaaatccagcaaagaaactcaaccaaactgcaacaggcattcccacaagataaaaacaacctaaatttatatttgcgc |
2990813 |
T |
|
| Q |
239 |
ctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccctattaaaggtaacactaaagatgt |
338 |
Q |
| |
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||| ||| ||||| || ||||| || || || |||||| | ||||||||||||||||||||||| |||||||| ||||| | |||||||| | ||||| |
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| T |
2990812 |
ctaatttcggcctcgccgttcccctcaaaacaccacaaacagttgtttgtggacaatttccaagctcacatagtcctataatcggtaacaccattgatgt |
2990713 |
T |
|
| Q |
339 |
aatttttattatctctttgtcttcagtgaacatgctagcccaaatgtttctaaccattacagcaaaaaccaaagcaaacacacctaaaatgaagctacaa |
438 |
Q |
| |
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| ||||| | | || |||||||| ||||||||||||||||||| | || |||| |||||| | | ||| |||| || || || |
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| T |
2990712 |
taacgcaattatttgtggatcacttgtgaacatagtagcccaaatgtttctaactgaaaaggcgaaaaacaaagcggagaaacccaaaacaaaactgaaa |
2990613 |
T |
|
| Q |
439 |
gagagtcctacaattgctgaaagttttgcttttgatggcttttgagcaccaagtttgttaccaactctagtggaaacactaaaacttattgatgatggaa |
538 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||| ||| |||| ||||||||||| || |||||||| || ||||||| |||||| | || || |||| |
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| T |
2990612 |
cagagtcctactattgctgcaagttttgctttttgtggattttcagcaccaagttcatttccaactcttgttgaaacaccaaaactcaaagaagaaggaa |
2990513 |
T |
|
| Q |
539 |
aaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaacaaaccacataacaagatcatgatttcata |
638 |
Q |
| |
|
|||| |||| ||| | ||| ||||||||||| | |||||||| ||||| ||||| |||||| | ||| || ||||| | ||| ||||||||||| || |
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| T |
2990512 |
aaatgtatatcaatgcagtggtttgaatcaacacacccatagatgcaacagttgcatgtggattaagcaataatccacaaagcaaaatcatgatttcgta |
2990413 |
T |
|
| Q |
639 |
ccaccaccattcaaggcaaacagaaagacaacttggtacagctaaattaagaagtgatttccattgtttgaaacattgtgatgaaaaaccaccccatgtt |
738 |
Q |
| |
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|||||||||||| || ||||| |||| || ||||| | |||||||| | ||| ||||||||| ||||||||| || |||| |||| ||||||| |
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| T |
2990412 |
ccaccaccattcgagacaaaccgaaatgcagcttggaattgctaaattcaaaagcgatttccatcctttgaaacaagcagaggaaattccactccatgtt |
2990313 |
T |
|
| Q |
739 |
ttcttgtgtgtgccaga |
755 |
Q |
| |
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||||||||||| ||||| |
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| T |
2990312 |
ttcttgtgtgttccaga |
2990296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 511 - 664
Target Start/End: Original strand, 28505699 - 28505852
Alignment:
| Q |
511 |
gaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttggatttatcaaca |
610 |
Q |
| |
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||||||| || ||| | |||||||||||||| ||| | |||||| || |||||||| | |||||||| ||||||| |||||| ||||||| | ||| | |
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| T |
28505699 |
gaaacaccaagactaagtgatgatggaaaaacataaaccaaagatgttgtttgaataagtattcccattgaagcaattgttgcttttggattaaccaaaa |
28505798 |
T |
|
| Q |
611 |
aaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
664 |
Q |
| |
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||||| | || ||||||| ||||||||||||||||| || ||||| |||| |
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| T |
28505799 |
gtccacacatcattatcatgaactcataccaccaccattcgagacaaaccgaaa |
28505852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 499 - 664
Target Start/End: Complemental strand, 51875145 - 51874980
Alignment:
| Q |
499 |
ccaactctagtggaaacactaaaacttattgatgatggaaaaatatatagcaaagaagtagtttgaatcaaaattcccatagaagcaacggttgctcttg |
598 |
Q |
| |
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||||||||||| ||||||| |||||| | || |||||||||| ||| | ||||||||| |||||||| | ||| ||||| |||| || ||||| ||| |
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| T |
51875145 |
ccaactctagttgaaacaccaaaactaagagaagatggaaaaacataaaccaaagaagttgtttgaataagaatacccattgaagaaatggttgactttg |
51875046 |
T |
|
| Q |
599 |
gatttatcaacaaaccacataacaagatcatgatttcataccaccaccattcaaggcaaacagaaa |
664 |
Q |
| |
|
| || | ||| | ||||| || | ||||||| |||||||||||||||||| | |||||||||| |
|
|
| T |
51875045 |
ggttgaccaaaagtccacacaaaattatcatgagttcataccaccaccattctaaacaaacagaaa |
51874980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 314
Target Start/End: Complemental strand, 51875421 - 51875330
Alignment:
| Q |
223 |
aaattgatatttgcacctactttaggccttgctgttcctcttaacaccccacaacctgttgtttgtggacaatttccaagttcacatagccc |
314 |
Q |
| |
|
|||||||||||||||||||| |||| || || | |||||||| || |||||||| ||||||||||| ||||| |||| ||||| ||||| |
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| T |
51875421 |
aaattgatatttgcacctaccgtaggtctagcactacctcttaaaacaccacaacccgttgtttgtgggcaattcccaatctcacaaagccc |
51875330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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